RNA id: XM_021578173.2


Basic Information

Item Value
RNA id XM_021578173.2
length 2206
RNA type mRNA
GC content 0.51
exon number 9
gene id LOC110500677
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 51169316 ~ 51174187 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGCTATTACGATGCCAATGAGGGCGCGGTTAATATCAGGAATCCCGGGAGGTTGTCTGGATAAAAAGTTTGCGGTGGTGATCTGAGCTAAGTTAAGACAAGAGGGGGACATTGTTGTGAATCTGTATCCGTGCGAGTATGACCGACGCAGAAGAGCAGAGCGCCCCATCGTCGGCACCAGTGGAAGAACCGCCACAGCTGGAGAGAAAAATTATAGCCTCTGCAGTCCAAGGCACGGTGAAATGGTTCAACGTGCGCAATGGCTATGGCTTTATCAACAGaaaCGACACCAAAGAAGATGTCTTTGTTCATCAGACTGCCATCAAGAACAACAACCCCAGGAAGTTCCTTCGCAGTGTTGGAGATGGGGAGGTGGTGGAGTTTGATGTGGTCGAGGCCGCCAAGggCTCTGAGGCAGCCAACGTGACCGGGCCTAGCGGGGTTCCTGTGAAAGGCAGCCGCTATGCGCCCAACAAACGTCGCTTCCGCCGCCGCCGCACCTCCCCTCGCAGCCCTCAGCCCGATGATAAGGGTGACGGCACCTCTGTCCCCACCTCGGAAGGCGAAGGGGAGAATGGCAGAGGGGAGAATGGTGGTGAACGACCTGCACCGCGACGACGCAGGCCCCGCAGACCCAGACGGGAAGGACGAGAGGGCGAGTCAGGGGAACAGGAGGGAGCAGTGGAAGGCGACCAGCAGAGGCCACCACCGCGCAGGTTCAGGCCCCAGTACCGCAGGCCATTCCGTCCTCGCCCACCCCCTGGGGAGGGTAAGCAGGATGGCAGCGCCCCCACCGAGAGGCAGGAAGGCCAGTTAGCGGACGGCCAGAAAGAGGTGGAGGCCCAGCAGACAAACGGGAAGCAGGCCAATGAAGACGGCCAGAAACCCCGCCGACAGTTCAGCCGCCGCAGGCAGAGGAACTCCGAGTCTAACACAGTCTCTAAAGATGGGACAGAGAAGCCAGCCTTGGGGCCTAGCACCACCGCTCAGACCTCCAAGCCAGCTGACGTCAAGGCCTCCCCCAAGTCCTCCCCCAAAACCATCCACAAATCACCAGAGGCACCTGCCACGACAGTTCCCGTGGCGGCAGAATGACGCCTCTGAGCAGATGGTGTCACGTGACCCCAGGCAAGCGGTGGGACTCCACACTAAACTGATGCAACCTTTCGGTGGTTGGTTGGAGGAGGGGTTTGGGTTACGCCTATTGCACTACTACATTGCACTACAAAACCGCATCGTAGGCCATATTGTAGCTGATGTCACTAGTATGTGACCATTTAGTTCCTTAAGTAATTAGTTATTTTTCTACATGGGTTTTTAGAGGAATTACATAAGTCTTTTGATGGGATGGAAAGCACCAGGTGGATTTAGCTTTTCCTGTTTCCTTTATAATTTTGGGACATTCTGGCATTCAATGAAAGCCCACCTATATTACAGGTGTAATTCGGTTGCCAATTGAAGACTCAAATCCTGTGGGACCCACTGCTTGTTTGAGGTTGGAAGTTTTAAGTTGTGGCATTATTTTGTGTTCAGTTTTTGTTTTAATGTCGGGCTCTCTCCTCTTGGCATCCTGTTGGTCTCGCTCTGTAGGTCCTATGGACCGTTAGACGCAGTCCCCCATCTAACAGGACATACCCACCTGACTTGTCTACACACTGCGtatgggagaaggggaggagaggaagggatatAGTGGGTTGTCTGTGTTTACAATTGAGAAAATACTCATTTTTAGAAGAAAGTGTGAACCTGCTTGGATGCCCATTTAAACCACAAAACCCACAACTTCTTTAATTGACTGAGAATGGGCACAAGCATTAGAGTGGCTCCAGCCTCTATTTAAGTTTGATAACATGAAAGCAAAGCAGGTGTGAGTGTAGTGGTAGTCTGGGACCTGACCCCCACCCCAGATTCTAAAACATGCTGCTGCCCCCCCCCTCATAAAGGCATGAGGCTGGTTTAAATAAATATTGTAATTGTAATTTTTTGGTTTTGTATGTGCTTGTTTGGAGGGGATTATGTGCAATGTCAGTATCAGAATGTCTATAAAAATCATGTTTGCAAAGACTACAATGCATTTCTTTGTACTGAGTAATGTGACCATACAATGTAAAATGTCTTGAATCACATTTAGTGGGATGAAACTGAAGTTGGTCATTTAATTTCTTCAACTCAAGCTCCAATAACAACATTTCATCTAAACTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2003206 lncRNA upstream 2611 51166349 ~ 51166714 (+) True G1749540
TU2003202 lncRNA upstream 25319 51143718 ~ 51144006 (+) True G1749536
TU2003187 lncRNA upstream 25895 51142985 ~ 51143430 (+) True G1749521
TU2003157 lncRNA upstream 83495 51085569 ~ 51085830 (+) True G1749498
TU2003145 lncRNA upstream 113868 51055242 ~ 51055457 (+) True G1749486
TU2003235 lncRNA downstream 26473 51200660 ~ 51200930 (+) True G1749567
TU2003248 lncRNA downstream 65084 51239271 ~ 51239603 (+) True G1749580
TU2003250 lncRNA downstream 66679 51240866 ~ 51241130 (+) True G1749582
TU2003252 lncRNA downstream 69418 51243605 ~ 51246308 (+) True G1749584
TU2003268 lncRNA downstream 124847 51299034 ~ 51301192 (+) False LOC110500685
XR_005038631.1 mRNA upstream 15555 51145280 ~ 51153770 (+) False LOC110500675
XM_021578167.2 mRNA upstream 15555 51145292 ~ 51153770 (+) False LOC110500675
XM_021578169.2 mRNA upstream 15555 51145293 ~ 51153770 (+) False LOC110500675
XM_021578168.2 mRNA upstream 15555 51145297 ~ 51153770 (+) True LOC110500675
NM_001165091.1 mRNA upstream 27428 51134498 ~ 51141897 (+) False gbrap
XM_021578177.2 mRNA downstream 27856 51202043 ~ 51216929 (+) False LOC110500680
XM_021578178.2 mRNA downstream 27856 51202043 ~ 51216929 (+) False LOC110500680
XM_021578179.2 mRNA downstream 27856 51202043 ~ 51216929 (+) False LOC110500680
XM_021578180.2 mRNA downstream 27856 51202043 ~ 51216929 (+) True LOC110500680
XM_036958129.1 mRNA downstream 43797 51217984 ~ 51230820 (+) False LOC110500679
TU2003175 other upstream 27317 51134089 ~ 51142008 (+) True gbrap
TU2003188 other upstream 35987 51116445 ~ 51133338 (+) True LOC110500674
TU2002232 other upstream 566048 50598910 ~ 50603277 (+) False LOC110500883
TU2002231 other upstream 566048 50599527 ~ 50603277 (+) True LOC110500883
TU2001256 other upstream 1559745 49606153 ~ 49609580 (+) True LOC110500625
TU2003336 other downstream 188499 51362686 ~ 51363380 (+) True G1749651
TU2003334 other downstream 244782 51418969 ~ 51450475 (+) False G1749650
TU2003752 other downstream 897413 52071600 ~ 52079002 (+) True G1750012
TU2003773 other downstream 920522 52094709 ~ 52095105 (+) True G1750030
TU2003797 other downstream 1017013 52191200 ~ 52197007 (+) True G1750050

Expression Profile