RNA id: XM_021578180.2


Basic Information

Item Value
RNA id XM_021578180.2
length 2434
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC110500680
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 51202043 ~ 51216929 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAACTCTGCACAGCCCCTCCCCTATTCTGGTTATTGGGGAAATCCCCGAAATGCACGCTTTTCACTGAAacaaaatattttgctttatAGCTGCTACGGATTGCATTGACAGAGAACCAAGGTGCTGCAAGAAAAGATTCATAAACGGGAGGCGAGATCCTATCGCCTTCCTCCCTCCTTGTGTCCCTGTGTCCAATCCTCTCCTCCCAACCGGTCTTGTGAACTGTCGAGAAAGTGAACGGATACAGGATGGAAGAGCTCAGCCCCCCCCTGGGCCAATGTTCCTTCCAGCAGATTTGGGAGAGCAATATGACACCTCAGGGGCCCAGTATTCCACTGGTTGCTACTGAAAACTGGTCTGACCTGGATGTCTCGCTCCTTCCCGACGCGACTCTCCACAAGGTCTTTGACGAGGTCCTGTTTGAACTGCTGGAGCCCCCGGTTGTGGAGCCCTCTGTGTCAAACCTGGACAGCGTGCCTCCCCCCGCCTCCACAGTCCCCTCCACCAACGACTACCCTGGGAAGCACGGCTTCCAGCTGCGATTCCAAAAGTCGGGTACCGCCAAGTCTGTCACTTCCACTTATTCTGTGCAGCTGAACAAGCTGTACTGCCAGCTGGCTAAGACGTGCCCTGTGGAGGTGTTGATGGCCATGGATCCCCCGCCAGGAGCCATCCTCAGGGCCACCGCTATCTACAAGAAGTCTGAGCATGTCTCTGAGGTCGTCCGGCGCTGCCCCCACCACCAGAGCGCCTCAGATAACAATGAAGgcGTGGTCCACCGCAGTCACTTGATTAGGGTGGAGGGGAGCCAGTGGGCTCAATACCTGGAGGATGGAAACACCAAGCGTCAAAGTGTGCTACTGCCCTATGAGCCTCCTCAGCTGGGCTCTGAAACGACTACTGTTCTCCTGAACTTCATGTGTAACTCCAGTTGCATGGGTGGTATGAACAGACGGCCCATCCTCACCATCCTGACCCTGGAGACCCAGGAGGGTCAGGTTTTGGGTCGCCGTTGTTTCGAGGTCCGTGTGTGTGCCTGTCCCGGCCGGGACCGCAAGACCGAAGAAGAGAACACAAACAAACTGAACGGGACCAAGACCACCAACGGCTCCAAGAGAAagtCCCAACAGGCCCTGCCCCCTCCAGGGACCAGCAAGAAGATCAAGAATGGCTCCAGCACCGAGGATGAAGACAAGGACAATGTATTTTTGTTGCAGgTCCGTGGCCGAGAGCACTATGAGTGGCTCAAGAAGATCAATGACAGTCTGGAGCTGATGGACCACATTCCTCCCGCTGAGCAGGAGAAATACAAGAAGAAAGGTTCCGCAAAGATCCTCAAGCAAGAAGCAATGGCCCCGAAGAGCGGAAAGCGGCTGCTTACAAAGGAAGACAGGAGCGACTCGGACTAAGGCCAGGACACGTCGGTCCTTATTCTCCTGTCTATTCCAGACCAACATTAAGTTGCGACTCCCAAGTTAAATGCCCAATACCAAACCCTAGTCCCTACATGTAGGCACTTCTGAAAGGATAGATATTAGCAAGATAGTAATAGCTCCACCTAGACAGCCATACGCTGGACCCAGAAAGGGGTCAATAGCGACGGACcaacattttaataaatgttGTCATATGAACACgcaagacatggcaaaatgtgtagaattgcaggaaattagcttcaaAACAGTTCAAACTGTGTAAaaagttgttttattttttattgtattgttttttttatatggcGGTAAATGACTGTCCATCCGGAGCTTTTAACAGCTAGGAAAATTGTGACcggaccttctcaaatagtacAAGTACCATGTTGGGATTTTCACCATATTTCGGATACCAGTCCAACAATTTCAGTATAACACAAACTGCGTAAGTGTATGGCCTAGGGTTTGGTTTAGAATTAGCTAGGTAAGCTAAGACCCCTCCTCCCACTGCCTTAACCATCTGCTGGgacttcctcctcctcacctgcCCCCCAAACAGCACTTTAGCTTGTGCTTTTATGATTTGGACCAATTAAATCAAGTATTCATATCTTGACCTGCCTAGCCACGATGCTTTGTTACCAGTTAATTGGCCAGTTGCCTGTTAGTATTTTTATACCTGTTGAACATAACTGCTGTTATCCCTCCCCCTGAAACCTTCTTTTGCCCCTTTTTTTTTAACTTGTTGCTCTGGTTAGAATGTTTTttcattgttaaaaaaaaaatacatttgagttCTCTCTCTTGTGAAGCGGTCTGATACTATGATTATGATACACTTAGCACATGTATATTTGTTTAATTTATCGTTCTCTGATGGAAACTCTTTTTGATGTAATTCGGTGCTGAGACATGAGGCTCTATTTTGTTTAGTGGGAAAGGAGACATTTCAGGGAACTTTTAAAATCAATTAAAGCAATTTCTTAAGTAATACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2003235 lncRNA upstream 1113 51200660 ~ 51200930 (+) True G1749567
TU2003206 lncRNA upstream 35329 51166349 ~ 51166714 (+) True G1749540
TU2003202 lncRNA upstream 58037 51143718 ~ 51144006 (+) True G1749536
TU2003187 lncRNA upstream 58613 51142985 ~ 51143430 (+) True G1749521
TU2003157 lncRNA upstream 116213 51085569 ~ 51085830 (+) True G1749498
TU2003248 lncRNA downstream 22342 51239271 ~ 51239603 (+) True G1749580
TU2003250 lncRNA downstream 23937 51240866 ~ 51241130 (+) True G1749582
TU2003252 lncRNA downstream 26676 51243605 ~ 51246308 (+) True G1749584
TU2003268 lncRNA downstream 82105 51299034 ~ 51301192 (+) False LOC110500685
TU2003269 lncRNA downstream 82105 51299034 ~ 51301192 (+) True LOC110500685
XM_021578172.2 mRNA upstream 27856 51169316 ~ 51174187 (+) False LOC110500677
XM_021578173.2 mRNA upstream 27856 51169325 ~ 51174187 (+) True LOC110500677
XM_021578167.2 mRNA upstream 48273 51145292 ~ 51153770 (+) False LOC110500675
XM_036958129.1 mRNA downstream 1055 51217984 ~ 51230820 (+) False LOC110500679
XM_036958130.1 mRNA downstream 1366 51218295 ~ 51230820 (+) True LOC110500679
XR_002470145.2 mRNA downstream 81950 51298879 ~ 51301196 (+) False LOC110500685
XM_021578185.2 mRNA downstream 99885 51316814 ~ 51332192 (+) True LOC110500686
XM_021578189.2 mRNA downstream 134384 51351313 ~ 51361533 (+) False LOC110500687
TU2003175 other upstream 60035 51134089 ~ 51142008 (+) True gbrap
TU2003188 other upstream 68705 51116445 ~ 51133338 (+) True LOC110500674
TU2002232 other upstream 598766 50598910 ~ 50603277 (+) False LOC110500883
TU2002231 other upstream 598766 50599527 ~ 50603277 (+) True LOC110500883
TU2001256 other upstream 1592463 49606153 ~ 49609580 (+) True LOC110500625
TU2003336 other downstream 145757 51362686 ~ 51363380 (+) True G1749651
TU2003334 other downstream 202040 51418969 ~ 51450475 (+) False G1749650
TU2003752 other downstream 854671 52071600 ~ 52079002 (+) True G1750012
TU2003773 other downstream 877780 52094709 ~ 52095105 (+) True G1750030
TU2003797 other downstream 974271 52191200 ~ 52197007 (+) True G1750050

Expression Profile