RNA id: XM_036958130.1


Basic Information

Item Value
RNA id XM_036958130.1
length 3996
RNA type mRNA
GC content 0.45
exon number 12
gene id LOC110500679
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 51217984 ~ 51230820 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tggagtcatgggTGTACAAGTAGCACAGAAATGGGCTGAGCACTAGTAATTCGCGGGTGAGCGGTTTGTTCACCCGCACCCACCTGCAGTAGCTAAAGATCCATCCGCAACCACCCGACACACTATGcgataaagtgaaaatctgaagCCCGCACTGGACCCAAAACCTCAAATATGGAAAATGCGCAGTAGCCTACAGAATGCGGGGGAAAAAAATGGCCAGGATTTCAAAAATAGGTCTATgtttctgttttacatttttgccAACTCTCAGGCCGTGAAACACTAATCACTGCACACCTTATCTAACGCGCATTGAAAAGTACTGCTTTTATTCTTCTAATTAGTCCATTATAGTCAGTGCATTAACTTTTCAACTGTGCTCCAAATCGTTTTGAAATCGGAGCATCTGCGACTGCAATTGAACATCACGAGCGAACCTCTATCCTGTCTTGCTACAACGGTGAAATGCGGAACATTGAAGCATATAATTGGTGAAGTTATGTTACGGATCAAGGGGATTGGATGCATGTTTTAAAGAAACAACCCTCAAGATTAGAGTGGAAATTAATGGCGATAAAGGTTCTATCACTGAGTTTAAAAAAACGTATGTACAATGTTGTCAACAAAATTAGGTTGCTGTTACTCCCGCCCCTAATTGCAGAATGCAGCCTTTTGACAGCATATTTAATCCACACTAGCAAAAGTGATTTTGGTGATTGGCATTTAGGCTGTGACAGACCCAGAGTGTTTTAGCAGGGACGTTTGGTACAGTGACCTGATTTGGAACTATGAAAAAGAATTTAGTCAAACAGGTTATGAACCCAAAAGTGTACATTTTATTCTAGAGGGTGGACAATAAATAGAAACATAATTTAGTTTAGTGTGTAGGGGCAGATTTGTCATCTTGTCTTTGGGATATTTGCTATATTTAGTCTGATCAGTGGAATAATTGTCATTCTTAACAATGAGCAACAATATAGGGTCATTCCTGTGCTTGTCATCAagaacactactgttattccccacaCTTATTTTATAGTTCCACTTCCCAATGTTGCCAGTGTTATCACATATTTGAAATCTGATGTGACTACTTGTCTTTGTAAATTAATTATATGAGGCTATGTATTTTTGCAGCCATTCATGGACAGTTTTGAATAAGCCATACAAATAAGCATGGGATATTAAATGCTCTAGGAATCAAATATAATTTGACATGTTAGGGGGACTCAACTTGTTCACATCAATGTGTTTTCCAATAATACTCTGAATACTCCAATGACACTCCCTGTGAgtcttctctctcatcctctcattcTGAATGCAGTCCGTGTGTCCATATTCAAATGAGAGCGAGACGTTGCCTACACAGGTGTAAAGATCAAATGCTGCGTCCGCAGTTGGTTTGTTCTCACTCCTTTTGAACAAAGAAGTCTGAATCGTTCCAGTCGAAGGATGGGCAGGATTCAACACCTGATATTATGGGCTGTGTTGGTGGTGTGTTGTGTAGCTGAGAGACAGTACTTCTTCCAGTCCAACTCCTCCACTTGGGAACAGGCCAGGCTACACTGCCAGGTGTGCTACAAGGAGATGGTGAGCCTGACCCCTGAAAACATCCAGCAACTTGCCCAGAACCTGACCTCTTCTTACTGGATCGGCCTCCGCAAAACCATGAACAACGGCTCCTTCCCCTGGTCCCGCTGGTCCAACGGAAACCCCCTCGCCTTCCAGAACTGGTACCCCGGTCGCCCCATACTCTCCAAGCCCAAGAATCCTGTGAACATCTTTAACAACTACTATTCCATCCGCCCCAATTACTGTGGGTGTTGCTGCACCAATAACAGCAACTCTACCAGCGTTCCCCCGGTAACTACTGTTAATAGTAGCTACCATGGTACTGACTTCGGTAACTCTACAGATGACCTTTTCACAGGAAAGGTAAACATGACTGCATCGTCAACGAAGACACCAGCCGTGACAAAGATGACGTCTGTCATGACGGGATCAACGTTCTTTACTGGAGTTACTGGTGGCATCAATGGCACCAATATGACTAGTGGGAACAATGGGACGAATGAAACTGAGACAGACGTGTACATTGAGGAGCCTTGCATAGCCATGCTCAGTTTTGGACTTTGGTTCGATAAAATCTGCTCAGAGCTTCTTCCTTATATCTGCTATGAAGACCGTTTCTACGGTAATGCCACCATGACCAACAAGACACTACACAGCGCGACTCTGAGCTGGACCCGTGGGCCTGGTGACATCAGCGGATACAGGATGGAGGTCAAGTCCACTGACTACAACCTGACCCTAAACCACAGCAGTCTGAACCAGACCTATGACCTTTCTAACCTCACCGCCGGAACCCAGTACAGAGTCCAGGTGTTCCCCATTAAGTGTGGAAGAGACCTCAACCCACAGAACGTCTCCTTCTACACCAAGCCTGGCGTGATCCAAAAACTCAATGTCGCCAATGTCTCAGAAACAAGCATCTTCCTGACCTGGTTCGCTCCTGAGGGCAACCATGACTTGTACAACATTCAGGTGAGGGGTGAACCCGACCTGAAAATGACCACACGCACAGAGAGCGCCCTGGTCAAAGGCCTGATACCAGGAGGGCTTTACACGTTTGAGGTCAATGCCGAGGTGGAGGACAAGTCCATCGAGGGAGATCGGCTGCATATCCCCTCCTACACCAAACCAGGAATGGTGTCAAACTTAAAGCCGACGGCTCTTACTAATGACAGTGTCCAATTCCAATGGGAACCGCCGACAGGTAACACCTCTGGGTACAGAGCGTACGCCTGGAGAGAAGGAAACAACGGAACGGTTGACATATTCAGGCTGGAACGGACATACACGACTCTGATGGTGGGGAACCAGTCGCCAGGTGCCAAGATCTGGCTGAGCGTTGTGGCACTGGTGCCCGACGGATCGGTTGAGGGAGAACCCAGCAAAGTGATTGGCCGCACCACTCCAGGTGAAGTTACAAACTTACTGCTGGACATTACTGAGGACACCATCAGAGTGTCCTGGACACCTCCTCAGGGAAACTACGAGACATTCAGTGTTCAGCTCAAGCTAAACGCTTCTAACAAGGAAGTGGAAACAGAGAATACAACTAACAGTCAACTCTCATTCACCAAGCTAAAGGCAGGAGCTGAATATTTAGTGACAGTCACCACTCTGAATGGGTATCTCAAGAGTTACCCAATTTCCACTGCAAATTTCACTCTTCCTCTCCCACCGCAATCAGCCCAAATCAATTCCTTCAATAAGAGTCATGTCACCCTGTCATGGAAAGCCCCCGTGGCATCCCAAGGTGTACAAATAATGTACCTGGTGAAATACATAACTGAATTCTGGAATGATACGCAGACGTACGAGACACACGCAACCAACTATACATTTCATGAGTTGCATGCTGGGACCAATTACACCTTCGAAGTACGAGTGAAGGCGGGAACCCAGGAAAGCCAGCCCGTCCAAACATCACAGACCACAAGTGCTACGGTGAGAGTTCGAACTATGACTATGGCGTGTTCCTCCAGCGAACCTTCCATCTGTGAGGATAGCGGCACACGGACAGAGGTCCTGCAAAATTTGATTAGCCATTTCCGCAAGTGGTTCAGCAAGATGGAAAATGAAACTTTGGTTGATAAGGTGTTCTGGGAACTGGAGTGGCGAGGGgcataattacacacacacacacacacacacacacacacacacaccacacaccacacaccacacacaatcaCAATCTATTCAATATAATTTCTTAGTCAAGATTAAGATGAATTGTATTTTGATAATAATAAATTCTAACAATAGATAAATGAAAAGTTGGATGTGTGCCAAGAATGTATGTGTTTTGAATTTCTTGTCTATCCTTGTTTTCCTTGTTTTCAGGATGTGATGTATGTTTTACAAATGCATTTTAGTAAGGTATTTTCTCTGACCAAATTACTGAATAAAAAgctgactgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2003235 lncRNA upstream 17365 51200660 ~ 51200930 (+) True G1749567
TU2003206 lncRNA upstream 51581 51166349 ~ 51166714 (+) True G1749540
TU2003202 lncRNA upstream 74289 51143718 ~ 51144006 (+) True G1749536
TU2003187 lncRNA upstream 74865 51142985 ~ 51143430 (+) True G1749521
TU2003157 lncRNA upstream 132465 51085569 ~ 51085830 (+) True G1749498
TU2003248 lncRNA downstream 8451 51239271 ~ 51239603 (+) True G1749580
TU2003250 lncRNA downstream 10046 51240866 ~ 51241130 (+) True G1749582
TU2003252 lncRNA downstream 12785 51243605 ~ 51246308 (+) True G1749584
TU2003268 lncRNA downstream 68214 51299034 ~ 51301192 (+) False LOC110500685
TU2003269 lncRNA downstream 68214 51299034 ~ 51301192 (+) True LOC110500685
XM_021578177.2 mRNA upstream 1366 51202043 ~ 51216929 (+) False LOC110500680
XM_021578178.2 mRNA upstream 1366 51202043 ~ 51216929 (+) False LOC110500680
XM_021578179.2 mRNA upstream 1366 51202043 ~ 51216929 (+) False LOC110500680
XM_021578180.2 mRNA upstream 1366 51202043 ~ 51216929 (+) True LOC110500680
XM_021578173.2 mRNA upstream 44108 51169325 ~ 51174187 (+) True LOC110500677
XR_002470145.2 mRNA downstream 68059 51298879 ~ 51301196 (+) False LOC110500685
XM_021578185.2 mRNA downstream 85994 51316814 ~ 51332192 (+) True LOC110500686
XM_021578189.2 mRNA downstream 120493 51351313 ~ 51361533 (+) False LOC110500687
XM_021578187.2 mRNA downstream 121125 51351945 ~ 51361532 (+) False LOC110500687
XM_021578188.2 mRNA downstream 121127 51351947 ~ 51361533 (+) False LOC110500687
TU2003175 other upstream 76287 51134089 ~ 51142008 (+) True gbrap
TU2003188 other upstream 84957 51116445 ~ 51133338 (+) True LOC110500674
TU2002232 other upstream 615018 50598910 ~ 50603277 (+) False LOC110500883
TU2002231 other upstream 615018 50599527 ~ 50603277 (+) True LOC110500883
TU2001256 other upstream 1608715 49606153 ~ 49609580 (+) True LOC110500625
TU2003336 other downstream 131866 51362686 ~ 51363380 (+) True G1749651
TU2003334 other downstream 188149 51418969 ~ 51450475 (+) False G1749650
TU2003752 other downstream 840780 52071600 ~ 52079002 (+) True G1750012
TU2003773 other downstream 863889 52094709 ~ 52095105 (+) True G1750030
TU2003797 other downstream 960380 52191200 ~ 52197007 (+) True G1750050

Expression Profile