RNA id: XM_021578186.2


Basic Information

Item Value
RNA id XM_021578186.2
length 3348
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC110500687
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 51350884 ~ 51361534 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACTCGTCAATAGCTCCTCCCCAAATAGGAAGTCGTGCACAAGCATTGTTTACAATTTGCCAGGCAAAGGTAGAAGACAACGTGAATACGTGTAGGTTTTGATGACAATTCATCACATTATTGTtgttttctaaaaaaaaaagtttaagatTTATTAGCAAATGACAATGGAGAATGCTGGCCACTTTCAAAGTCAGCTAACCTCCCTCATGAACGCGGTAGTGACGGCAGCGGTCGTGGAAATAGTCCGACTGGTAGAGGACAGCGCCGTGGTCCTTCGCCAACAGTTGTCCAAAAGTAAACTGGAGAACGAAGCATTAAAAGTCGAAAACGAGTCGAATAAAAAGAAGCTGCAAATTTTGGAAGGCAAGTCGATGGCGGCAAAGCAACGTTCTGTCGCTCGTCATGAAGCTGATGGCAGGAAATATGAACTTGTCCACACAAAAGAcgatggaaagggagagaagaCAGGTGCAGGGCTGCAATCTCAGGATCCGGCTGGCCAATCCCAGtggaaattgttaaaagttgtTACCATGGAGAAGGATGGAATGAAAGTACTTCGCATCaagaaggaaataaatgatgACACAGAACATGACACACCATCTCCAGTGACAGATGAGCAGCTGTGTCCCAAAGAGGACATGGTGTTTTATAAGGAGTGGAGCCAAAGCCTGTGGCGAGACGACAGAACAGAGGAAGAAACTCCAGGATCATCAATGACCCAGCATCAGAACGGAGGGCTACTTCAGTGCAGTAAGCTGAATCCCTCCACTCCCATCCTCAAAGTCTTCTGTGATCCTGAACGAGACACGTATCCCGACTACCGATTGAAGAGGGAATCTCTGAATTATCTGTTCTCCTTGGCCCTGACTGGTCAAGACAGACAGACGGCAACATTCAAGATCCTCGTCTTTATTTACTGGTTGGCCCACGGGACCTCCTATAAAACTGTCTCGGAGACTTTCGGAATCCCTCTGTCCAATGCTACCAGCATCGTCCGCGACGTTGCGGACAAACTGGTCAAGCTCTCTCTGAAGATTGTAAACAAGCCCTCTTCAGGCGAGCTGGCTCTCACGGTGCAAGGGTTCGGCAGACTGGCCCGTCACCCGGTGTTTGAGAAGGCTGTGGGGGCCATAGGTGGGTGCCACGTCAGGGTCAAGATCCCCGGTGTACCGCAACCCCAACAGCGTCCAGGTGACCAGCCCCTCCCTGAGAAGGCCCTCCCCACCATCAACTTCCAAGGGGTCTGCGACCACACGGGCAGCTTCATCGACGTCTTTGCGGGGCTGCCTGGGTCTATGACCGACGTGAGGATCCTGAGGCACAGTCCCCTTTACAAATGTGCCCTCTACCCTCCACCTGGATGCTTCCTCCTAGGCGACGGCGGGTACCCTTGCCTACAGACGCCTGTGTGCATCATCACACCCTATTCAAAGTCTGACCAGAACCCGGTGCACGTCCAGTTCAACCAGCACCACGCCATGGCTCTCTCCTCCATCGAGAGGACCTTCGGCATCATGAAGAAGCGCTGGCACATGATCTTCCTGCAGCCTCTTGAGCTCCACCCAAGCTTCATCCCCAAAGTGCTGGCGGTGTGCACCGTGCTGCATAACATCTGCCTCAGGTCGGGAGACTTGCTGGAGCCAGTGAAGATTGAGGATGGAAGCAAGGTGACAGAGGCTCTGAAGGAGTGGCTAGCGTCCAATGAGACCAGCGGAGAGGTGTTGAGGGACAGTTTGGCTCAACAGATCTCTACAATGAAATGCATGGCCACTGTGAAAGATGAGCGAGGTACATCTGCACCAGCAAACATGACAGCAGTGCAAAAAGAACACGCTTACAACATAGTGGTGATGGAACATTGATTTGGTGATCACAATTGATGGGTCGAATAAGTCACCATCAGTCACCGATTACACCACTGGCTAGCTGTGATACTTCATGTGCCCTTAAGTGGTGGTGGAACTGTTACTactgacatttttgactttttcACTAAAACAATTAAGCATAGTCATATGCCAGTGTTTCTTTACCATGTCAAAAATCATCCACTTTATTTCAAATATGATTTCCTTTATACTGTACACAGTATAGTGAAACACGATTTGGATTATGTTTTTGTGGGTGGGGTAAATGAGTGGGTCAGGTATTCAAATATGATTTCCTTTATACTGTACACAGTATAGTGAAACACGATTTGGATTATGTTTTTGTGAGTGGTGTAAATGAGTGGGGCAGGTATTCGAACTTGTTGCTGTCTTTTTGATCAATTCAGTGATTATTACAAGTGTGATCTACTCAAACGAGTTATACTGTATACTCCATATGATTGATAGGGGGCGCTACCACCTTGCccccatcttggcactcccctaTTTAGCATAAAAATTAAGTGAGAAAATATATGAACATTTTCCTTAAAGTACATTTATTTTTAGAGTACTAATGTTAccgtccccactacaacaacaaaaatacttaaatacatgtaattttgtccttaaCATTTAAACTACTGTAGAATCCctttcattcctatggaggactgctcctactagGGAGTGCCATATGGCTGactggtggcttcaaagcctctcaatgacCAATACATGGCATCAGTAGTCCTTGGTTTATATACATCGTTTCTACTTGTTACGTTTTCTTTTTCGGTTGAGTTGAAAATAAAGCAATATATCTACCTCCAAATCCTTTGTAATGCGAATGGATTAATTATTTTCTTGTGCCTTAGCCTTTCTGCCCTATAATACTATGGTTtattcaaatgtgtgtgtgtgtgagaaggttTTCCTGAATTTTCAATGCAGTAGTTTCGGCTTAGAAAAACTGAAAGGTTATGTTACTTCCCAAAGGTACCACCAGGAGGCACTGAATGAATTAGTGTTATTACTGTATGGATACTCAAAGCATCCCCTATAAGCAGGCGGGTTTAAATCTGTCTTCGGGGACCCGCAGCCGTTTCATGTATTTGAACTATTCCATAGCTAGCTCACCTGCTTCATCTAGTCACCTAAGCATCAAGCCCTTGAATAGGGGAGTTGGGTCAAGACTACAACAAAATTGTGAAGCATCTGGGTGGGGTCCCCAaggagaggtttgaaaaccaCTACCCTATAGTCTTTGATAAAAGCATTCTTCATTGTGCCACCTAAAGGGACATTTTTACCTTAGAGAAAAATACGACATGGTAGGTTCATGGTGCCAGGCTAATTTCAACCACCAATGCACTCCGTGATAAAACAGACCAAAGCACTCTTCCATCCTCAAGGCATATATTATTTTGGCAACTGATTTCAATGTTTCATTGATTCTCATTTATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2003343 lncRNA upstream 386 51350884 ~ 51351562 (+) False LOC110500687
TU2003329 lncRNA upstream 8935 51342486 ~ 51343013 (+) True G1749646
TU2003327 lncRNA upstream 10355 51341367 ~ 51341593 (+) True G1749644
TU2003325 lncRNA upstream 12041 51339518 ~ 51339907 (+) True G1749642
TU2003324 lncRNA upstream 13248 51338343 ~ 51338700 (+) True G1749641
TU2003344 lncRNA downstream 3878 51365409 ~ 51365714 (+) True G1749659
TU2003359 lncRNA downstream 22814 51384345 ~ 51385146 (+) True G1749674
TU2003362 lncRNA downstream 28164 51389695 ~ 51403541 (+) True G1749677
TU2003333 lncRNA downstream 51840 51413371 ~ 51414218 (+) True G1749649
TU2003339 lncRNA downstream 53249 51414780 ~ 51416353 (+) True G1749654
XM_021578185.2 mRNA upstream 19756 51316814 ~ 51332192 (+) True LOC110500686
XR_002470145.2 mRNA upstream 50752 51298879 ~ 51301196 (+) False LOC110500685
XM_036958129.1 mRNA upstream 121128 51217984 ~ 51230820 (+) False LOC110500679
XM_036958130.1 mRNA upstream 121128 51218295 ~ 51230820 (+) True LOC110500679
XM_021578180.2 mRNA upstream 135019 51202043 ~ 51216929 (+) True LOC110500680
XM_036958136.1 mRNA downstream 9190 51370721 ~ 51413247 (+) True LOC110500885
XM_021578194.2 mRNA downstream 95697 51457228 ~ 51485888 (+) False LOC110500691
XM_021578195.2 mRNA downstream 95697 51457228 ~ 51485888 (+) True LOC110500691
XM_021578199.2 mRNA downstream 140067 51501598 ~ 51507145 (+) False LOC110500694
XM_036958139.1 mRNA downstream 140067 51501598 ~ 51507145 (+) True LOC110500694
TU2003175 other upstream 209940 51134089 ~ 51142008 (+) True gbrap
TU2003188 other upstream 218610 51116445 ~ 51133338 (+) True LOC110500674
TU2002232 other upstream 748671 50598910 ~ 50603277 (+) False LOC110500883
TU2002231 other upstream 748671 50599527 ~ 50603277 (+) True LOC110500883
TU2001256 other upstream 1742368 49606153 ~ 49609580 (+) True LOC110500625
TU2003336 other downstream 1155 51362686 ~ 51363380 (+) True G1749651
TU2003334 other downstream 57438 51418969 ~ 51450475 (+) False G1749650
TU2003752 other downstream 710069 52071600 ~ 52079002 (+) True G1750012
TU2003773 other downstream 733178 52094709 ~ 52095105 (+) True G1750030
TU2003797 other downstream 829669 52191200 ~ 52197007 (+) True G1750050

Expression Profile