RNA id: TU2003404


Basic Information

Item Value
RNA id TU2003404
length 2527
lncRNA type sense_over
GC content 0.39
exon number 2
gene id LOC110500695
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 51509283 ~ 51554830 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcagaggaggagaggaaagtaaGCCAATAGACCATGTTAGGTCTCTAGGACAAATACTGGCTTCATTCATGCATACTTTGTCCATTTGTGTCAAGCCTTGAGGTGTATCAGTTAGTAACATAACCAAATTATTGAAGCTCTTTTATTTTCACTTAACAAATCGCAACGGGTCTATTACGGTAATTGCTTCCTGCCTCAGCCAAGGCATGCTCGCCCTCTCCTTCATCGTTAGTGGAGATTTAGGGCCGGACGCGGCTCATTTACCCAGCATCCTCGCTACTTACCTGGACTGAATGAATTAGACGTTCATTCAAATAAACCCGATTTATGGACTCCATTTCCACCCTCTCGTACCCAGCTATTATTACCAGAGGGGGATTATGTCTCTTTGTGAACACCTGTCATGTACTTTTGTTCTGCATGATGTTGTCAAACAAAATGATTAAAGATTACCTTTACCAACCGTGGGGGAAAATAGTCTCTAGGGAGCCAACAATGTGTGAGGCTAAGCCAATACCAGGCGTCGTCTAGTTCTGAAGCCAGCTCTTAAGCCTATTTCTCATCTGTTTTCGTCTGAATGCTCTTCAAGGTCACAATCGGTTGTCCTCTCGTTCAAATGATAACAGTTAAGATGCCTAAGTCAAATAAATGAGGCAGATTTGTTTCCAAGACAACCACACTAGAGAaaaggttgaaaaaatatatatatatacacacacacagggaggatTCAAAATATAGTACACTTTAGAGGAAGCGATTGGCTGTAGACTAAACAATTACACATGCATGTGCTTTTGACACATCTTTGTTAATTGCTCATACAGGTAACGGCTTTCTTTCTTACACTCGGTCAATAGTCAAACAGGACAATAATAAGAGCAGTTTGGCTACGGAGGAGACGCATCTAGACCTTGGAACTAAATAACCACAGATTGGCCCATGCGTCGTTCTCCCACACTTTATGAACTGAACTGAACAAATctgaacttttatttaactaggcaagtccttACACAAAAGCATATGGAACACATCAATTGAATAAACCAAATTAGAATATCTCTGATGGAGCTGTCAGAGAGGTTTACCCTGTCAACCTGAATTAGACTGATTCCGATAAAGGAAGTATCTgatttctctctcttgtcttttCGGTTTATTTGAGTAAACAGTTCAGATGCAAGATACTTGGGGGGTATTTGTTGGTATAGGTCATCTCCCTAAAGTCCTGCTTAAATGGACTAATTTAATCAAAATCGTCAAACAATAAGTAACCTATAAAAGATTATTTGGATGGTGCAATTCCCTCGGATATGTTCGGACTCACACTCAGATAATCACAGTACTgtacacagtgcatttggaaagtattccaacattttgttacgttacaatctacacacaatggggtattgtgtgtagattgagggggaaaaatgtatttaatccattttagaaaaaggctgtaacgtaacaaaattagaaacaagggaaggggtctgaatactttccaaatacactgtagTATTCCTTACTATGACCAGCTCCCATCAGCTTGCTATGGAGTTTTATATAGGGTGACAAGTGATAGGATATCCTATTTTTATAATGGCCCTTTTTCTATTTTAAACACTGGACTTAAAACATTTTGAAGAGGGCCAGAGACTGTCTACGTTAGGATGCTTGATTGCTTCATATTTTTGGGACGACatagtttttaattgtatttcaCTATTAGGTTTTCAGTGGAGTATTTAAGATGGAACAGTATGGGTGTTTCAGTGGGGGAAAACTCTGACGTTCCTGCTTCCAAATTGAACCAAATGGTTCTGTAAAATCTCTCTAGCCATAAATATTTTTCGAGCGATATCCTTCTGACTTGTACATTGAACAAGATCCCAACCGGAGATCCATTCGAGGCACCCATACTGATAGACTGCTATCAACCTAGTAGAGATGAGGTCTTCAGTTTGACTGAAATATGTCTTGACAACAGTGGACATTTtgtgacctcctccctgtctttGTAGAATATATATTTGCTTTCTTCAAAACATAGGCTATGTGATGAGTATTATGTTGCGTTTCCTCAAAGCAGTACATTTTCCCAGATTTggggctctattcagtctgtatcgctgaagcgttacagattttGCGAATAgaaatttaaaggtaatttctgagtgagccgacatatgcagcatttacctGGAATGCTGTCTCCGCcaacgcgggaacattgcctttaaatttcagcTTGGCAATAGgaattgaatagagcccttggTTTCTGTTCATATGAGTTTGTCGTTGGGCTTTGAGAGGATGTCGTCATTTGTTGAGTTGTTTGTGAAATCCGCACTGGGCTGGGCCTAATCAAAAACTATTTTATTGTTGTGCATCAGAggcgtgtttgtgtgtatgtgtgagaatGTATGTACTTGTTTTTTCCACAGTTTAACCTGTGGAAAAACATAAAGGAAACACTCAAAAAGAAAATGAGACCAAATAAAATGTAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2003335 lncRNA upstream 126568 51418969 ~ 51425541 (+) True G1749650
TU2003339 lncRNA upstream 135756 51414780 ~ 51416353 (+) True G1749654
TU2003333 lncRNA upstream 137891 51413371 ~ 51414218 (+) True G1749649
TU2003362 lncRNA upstream 148568 51389695 ~ 51403541 (+) True G1749677
TU2003359 lncRNA upstream 166963 51384345 ~ 51385146 (+) True G1749674
TU2003340 lncRNA downstream 15592 51570411 ~ 51573264 (+) True G1749655
TU2003558 lncRNA downstream 221582 51776401 ~ 51777211 (+) True G1749835
TU2003559 lncRNA downstream 222892 51777711 ~ 51780760 (+) True G1749836
TU2003590 lncRNA downstream 265834 51820653 ~ 51820956 (+) True G1749858
TU2003597 lncRNA downstream 274405 51829224 ~ 51829803 (+) True G1749864
XM_021578199.2 mRNA upstream 44964 51501598 ~ 51507145 (+) False LOC110500694
XM_036958139.1 mRNA upstream 44964 51501598 ~ 51507145 (+) True LOC110500694
XM_021578194.2 mRNA upstream 66221 51457228 ~ 51485888 (+) False LOC110500691
XM_021578195.2 mRNA upstream 66221 51457228 ~ 51485888 (+) True LOC110500691
XM_036958136.1 mRNA upstream 138862 51370721 ~ 51413247 (+) True LOC110500885
XM_021578207.2 mRNA downstream 1407313 52962132 ~ 52963960 (+) True LOC110500700
XM_021578208.2 mRNA downstream 1414689 52969508 ~ 52971316 (+) True LOC110500701
XM_021578209.2 mRNA downstream 1434543 52989362 ~ 52996635 (+) True LOC110500702
XM_021578230.2 mRNA downstream 1550738 53105557 ~ 53139436 (+) False LOC110500711
XM_021578229.2 mRNA downstream 1550741 53105560 ~ 53139219 (+) False LOC110500711
TU2003334 other upstream 101634 51418969 ~ 51450475 (+) False G1749650
TU2003336 other upstream 188729 51362686 ~ 51363380 (+) True G1749651
TU2003175 other upstream 410101 51134089 ~ 51142008 (+) True gbrap
TU2003188 other upstream 418771 51116445 ~ 51133338 (+) True LOC110500674
TU2002232 other upstream 948832 50598910 ~ 50603277 (+) False LOC110500883
TU2003752 other downstream 516781 52071600 ~ 52079002 (+) True G1750012
TU2003773 other downstream 539890 52094709 ~ 52095105 (+) True G1750030
TU2003797 other downstream 636381 52191200 ~ 52197007 (+) True G1750050
TU2005665 other downstream 1407630 52962449 ~ 52972383 (+) False G1751699
TU2005666 other downstream 1407630 52962449 ~ 52972383 (+) False G1751699

Expression Profile