RNA id: XM_036958235.1


Basic Information

Item Value
RNA id XM_036958235.1
length 4898
RNA type mRNA
GC content 0.50
exon number 17
gene id LOC110500891
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 54349344 ~ 54508277 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAActtccagacagagagagcgctgGGCGGAGAGAAACAGTTGCGTCTCGTTTTACAgcgaagagagagaaggagatacagAAAAACAGTGAAGGGGACAGATTTTAAAGCGCAGTCTTCCCTCGGCGCACTTGCTGATAAGACACGATTAGCTCTCTATATTATAGTTGCCTGCCAGCACCGTGGTGCAAAACTGCAGATGCAAGCATTCAAACAAGATCCGCTCAGTTTCTGAGCCGAACAGGACATGCAGGCACAGGCAGTTTGACTATCGAGAGTTttgaaagagggaggaggacggaaggaaggaagcaaaaagggaagaggaggagaaaagagccgGAGAAAAGTTTGAAAGGATACGCGAGACCGGAGACGTTGCCGGTTGGTCACCGTAAAGAAAGGCTATTCAAAGCTGGTATCGCGGGGAAAATCTATCCTCGGATAAACAGACGAGGGTCGGTCGTTGGCCGCTGCCGGGTGGGGAGAGGGATTGTATTGATATTCGGCAGCTGCCGGGAACGCGCCTGATTCCGTTTGCTGTTTGGGGAATAGATGCGCTGGGAAGCCACGATGCGGAGCGATCCCATTTTGTTCGCTTCCAGGGCCATGGAGGAGTTGGTGTGTGAGCTTCGTCTGTTCCTGGACCTGCTGGACAGGGAATATCTGAGCGCTGGGGTCAGGGAGAAGAAGATGCTCATCTCCAACATCCTTCACAGGGTCCTCACCGCTAAAGaGCCCTCGTTCAAGTCAGAGGACCACAGCAGCCTTTCTGCACCCCCTCAGATGCCACTCCCTGAGATCCCACACCCCTGGCTCCCTCCAGACAACgggcctcctcctctccccagctgCTCTCTCCCAGAGGGATACTATGAAGAGGCCGTCCCCCTCAGTCCTGGAAAAGCCCCAGAATACATCACTTCCAACTATGATTCTGACCAGATGAGCAGTTCGTATGAGTCGtatgacgaggaggaggaggatgggaagGGAAACAGAGGGAAGAAGATGCGACACCAGTGGCCTAGCGAGGAGGCCTCCATGGGTCTGGTCAAGGACGCACGCATCTGTGCCTTCCTGCTGCGCAAGAAACGCTTCGGCCAGTGGACCAAGCTGCTCTgtgtcatcaaggacaacaagcTGCTGtgCTACAAGTCATCTAAAGACCAGACACCCCAGATGGAGCTGCTGTTATCAGGCTGTAGCATCACACATGTCCCCAAGGACGGCAAGAAGAAGAAACACGAGCTGAAGATAGTCCACCAGGGGGCAGATGCCCTGGTCCTGGCCGTGCAGAGCAAAGAGCAGGCTGAGGAGTGGCTCAAGGTGATGAGGGAGGTGTGCAGTAATGGCTGTGACTCAGATGTAGCAGGGTCTCCTGTGCACAAGCCCGACCTGGAGAAGAAGGTGTTGTGTGATAGGCCGAGCTCAGACGGAGAGCCGCCCAATGAGAACGGACACACCGTCACCGACTGTAAGGACCAAGgtaAAGGGAAGAAGGACTCTCAGAAGAGTCAGAAGGGAGGCACTCTGAGTAAAGGGGCGGGGAAGAAGATCACTAAGATCATTGGCTTAGGCAAGAAGAAGCCGTCCACTGACGAACAGACCTCTTCAGCCGAGGAGGACATACCCACCTGTGGCTACCTGAACGTGCTGTCCAATAACCGCTGGCGTGAGCGTTGGTGTCGTCTGAAGGACAACCAGCTGCTGCTTCATAAGGACCGTACTGATCTGAAGACCCACACGGCCAGCCTGCCCCTCAGAGGCTGCGAGGTCAGCCCCGGACTGGACTCCAAACACCCCTTCGCCTTCCGCCTTCTCCGCAACGGACAGGAGGTGGCTGTACTGGAGGCGTCCTCCTCAGAGGTCATGGGTCGGTGGCTAGGGATGCTGCTAGCTGAAACAGGCTCTATCACAGACCCTGCTGCCTTACATTACGATTACATAGATGTAGAGACTACCGCAAACGTTATCCAGCTGGCCAAGCAGTCCttctgCTTCACTAGTAAACGTGCTGTATCTCCCAACCCTTATCTGGACAACCCTGCCAACAGTTACGCATGTCCCTCTGGAATGGCACTGCACTATGATGATGTGCCCATCAATGGaacgCTGAAGGGAAAAAAGGTCCCAGTGACCAATGGGACAGCGTCTAAACAGAAGGTGGACAAGAACCAGGCCAAGAAGACCAATGGAACAACCAATGGAACAGCATCTGTGAAACGCAACAACtccagtgCAGAGCAGTATAAGTACGGTAAGAACCGTGTGGAGGCGGACGCCAAGATGCTGCAGGCTAAAGAGGAGGAGCTAATCAACAGAAAGCAGGACATCAGGAACCGTCTGACCCAGCTGAAGAAGGACAGGAAAGACCTGCGCACCGCCATGGAGGCCAGCACcgCTAAGCGCTCCGCTGGGTCCCTGGCGGAGCGGCTGAAAAAGGTGGAGGACGAGTGCAAGCTGAAGGAGGACGAGCGGGTGAGCCTGGAGCTGGAGATGACAGAGGTCAAGGAGAGTCTGAAGAAGGCCCTGAACGGAGGAGTCACTCTGGGACTCACCATCGAGCCCAAGTCTGGCACCTCCAGCCCACAGTCCCCAGTGTTGCTGAGGCGTACCCTAGAGAACTCTCCCATCTCCAGCTGTGACACCAGCGACACAGAGAGCTGTTCTACTCTGCCCGTCAACAGTGCCTCCCTCCTCCGCAGAACGACCAATCAGAAACCCTCGGCCGTCCGCGGCCATGTCCTCAAGAAGGCAAAGGAATGGGAGATGAAGACTGGCACATGAGCAacaactctgttcacaacagtcCTATCTTATTAGctttctattttattttaatgcgtgtatatatttatttaaatcaGTTCGTATGGGGAGGAAGGTTGAAGAGGAGTACACTACAAGCATAGCCAAACAGAGAGACGATCAAGACAAtgctgattttttttgttttttgtctaCTTTATTTCCTGGACATAAAGAACTAGCAGTCTTTTTCTAGCGTACCATTGTGTAATACCATGTCATGTTTCAACTACTCTGTCGTGTGCTTTTGTATCGCCCAATCTTGTGTTTTTTTGTTCGTTTTTGTTTTGCAGTCATCCCCTTTCATACAGTCTCTTGTTGCCTGTTTCTCCATCACATAAAACAATCAGGTTTCTACAACTCGTGGGGTTCCAAAATCAAGTGCATATTTATTTGTAAATGTTTCTTAGGTAAATACTAGCATCCTTGTGATTATTTATGTTGATAATATTTAATGCTTGTTGTATTGTATAGCTCCCTCTCTTTAGAACAGGAACTGCACTGTGCCACTAATGTCCACAGCATCTGGATCCAGCCGTTAGTATCACTGTTGGGCAATCCAGATGATTTTCAAATCATCAAACCAACAATACACCTACAGTACTCCTAGTCCTTAGTGGTTGATGCCTGGGAGTGGGCCTTTGGAATGTGCCACTCGGTAAAGTGCGGGTCAGACTAAGGCGTGGCGGTGTTCTGGTGAGTTTGGCCACTGGCGTTGGAAAAGTCCTCAACCTCAAGTAATGTAGCCTCTTGTATTTACACTTCTACATCCAGGAGCCTCGGGCCAGCTCTTTTAATCATGCCACTGGTGCACTATAACCCAGTGGTCtggtctcactctgtgtgtgtgtgtgtgtgtgtgtgtgttagtttatgtgtgtatgtatgcattagtttgtgtgtgtgtgtgtgtgttttaaaatgTCTTGAGGCACATTCCAACCCCATCATTAATACACTGTTAGAAATAGAGGCCTGTATGGTCAGAAATACTGTGTGTTCTCTGCTTCAACCAGAGACTGTAATCTGGTTGTGGATTCTTGAACTTCCAGCTGCTCTAGCAACACGTTTCAGCtcatacacatcacacacacacatcacacacacacacacacacaccacagacacgtTTATCTAATGTATTTCTAATGCTGTTTTTGGTAATGATTTTACCACATCTACAGTACACTGCAAAATATTCCCATATCCACACTGCTCAGTGTAATCTAACCACGGTGCTTTGTAGGGGTGAGACGTAGCATGTTGATGTACTACTGCAAGCAAGCTAAGTTTTTACTATTTTTACTCAAAGGCACGTTTACCTTTAAAACGTCTGGTTTATGGTGCATTTATTGGCCTAGTTGGAATATGAGGCTGTGCGTAACAAAAATGGCCGCCAACAGCTGTTTTCAAATTATCAGTGTACATGTTTGTATCCCTCTTTGCCTCTCTATTCATTCAGATTGAGGTTGGGGTTCAATCCCATCGCGGGTTAAATGCATCGTGGTGTTTTAAAGGCAATTGAgtcgacatatgcagcgtttatcGTGAATGGGAACATTGCCTTAAAAAGCCTCAATGCCCATAACTTGCGATCGGATTGGATCCCGGCCAAAGTCCAACTAGGCTGCGAGTTAGAGCTAGCTCTTCACCAcaagatgagggagagatgaggagaaaggtttacagggaggggagaaagagttACGCATCTGGTCCATTTTTGGATCCCTCTCTTTTCTGTTTAAACAACTTCAAATCTGaaatgggcagagagagagagatgatgatgtCACTCAGAACATGTGAACCCATTTTACCTGTACAACGCTTTTTGGGAGGGGacaggatgggaggaggagggggggggtgtattgGGTAAAGGGAGTAGGGGAGAAACAACAAAagagtggaggggggagagaggggaggggttggGTGTTTTGGGTAAAGGGAGTAGGGGAGAAACAACAACAATGTTTGTTTTGCACCTTAGACTTTTCTACTCCATTGTACTTCTATTGACAGTCGCCAACTCGGTGACGAACGGCTGTATATAAAAAGTAATAAACCTCTTTACAAATGTT

Function

GO: NA

KEGG:

id description
K18616 AFAP1; actin filament associated protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2006918 lncRNA upstream 2300 54414176 ~ 54415043 (+) True G1752814
TU2006901 lncRNA upstream 56364 54360526 ~ 54360979 (+) True G1752798
TU2006814 lncRNA upstream 69168 54344087 ~ 54348175 (+) True G1752727
TU2006879 lncRNA upstream 94136 54322034 ~ 54323207 (+) True G1752782
TU2006805 lncRNA upstream 219694 54197051 ~ 54197649 (+) True G1752724
TU2006966 lncRNA downstream 5350 54513627 ~ 54515753 (+) True G1752853
TU2007062 lncRNA downstream 195792 54704069 ~ 54704901 (+) True G1752942
TU2007100 lncRNA downstream 240568 54748845 ~ 54750853 (+) True G1752969
TU2007052 lncRNA downstream 252172 54760449 ~ 54762436 (+) True G1752932
TU2007106 lncRNA downstream 255632 54763909 ~ 54765493 (+) True G1752975
XM_036958225.1 mRNA upstream 74762 54237515 ~ 54342581 (+) False LOC110500735
XM_021578271.2 mRNA downstream 447270 54955547 ~ 54960002 (+) True LOC110500744
XM_021578264.2 mRNA downstream 457957 54966234 ~ 54968068 (+) True ccdc96
XM_021578265.2 mRNA downstream 474515 54982792 ~ 54986995 (+) True LOC110500741
XM_021578449.2 mRNA downstream 623691 55131968 ~ 55133176 (+) False smim20
XR_002470156.2 mRNA downstream 633947 55142224 ~ 55148988 (+) True LOC110500752
TU2006819 other upstream 109853 54206698 ~ 54307490 (+) True LOC110500735
TU2005860 other upstream 1160742 53251749 ~ 53256601 (+) False LOC110500722
TU2005670 other upstream 1444960 52962449 ~ 52972383 (+) False G1751699
TU2007280 other downstream 493302 55001579 ~ 55010870 (+) False G1753100
TU2007277 other downstream 500049 55008326 ~ 55011678 (+) False G1753100
TU2007265 other downstream 500157 55008434 ~ 55011678 (+) False G1753100
TU2007279 other downstream 500157 55008434 ~ 55011678 (+) True G1753100
TU2007604 other downstream 1082328 55590605 ~ 55591140 (+) True LOC110500754

Expression Profile