RNA id: TU1994901


Basic Information

Item Value
RNA id TU1994901
length 1183
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G1741973
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 44818362 ~ 44824568 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttcatGTTGTGTTATGTAGTGACTTTGCTGGTATgcatccccccaaaaaatgtgggctagtttgccccaccaagatttacatgataAAATTGCAACTGGGCATAAACCATTGCAAAATAACATAGAATTGCTggaaatgagctttaaaacaGTAACATTTTCCAAGTTCCCCTTCTAGGGATTGTGCAAGGGGGGCAATGAAATTCACATAGCAAATCTCACTCCAAGTTTCTTCAAAAGTTGCCAGCCCTGCTGAATGTATGTACCTTAGAAattgttttcacacacacacacacacacacagcccAAACGCTGTCCAGTCCACTCTCACTCAGGACAAGCGCCTTGAATTTTTTTGTTTGGCACCAGACTTTCTGGCCAGTCACTCGTTCCCTTGTTTTCTGTCCTACCACAGTTAACACCTCTACACTCTTAACTCCCATTCCCTCactactggtctgttctctgagcaaaaataaaataaaaacctctTTCCTGTGACACAAAACTCAACAATGAACTTTTTCAAATTCAAGGCACAATGTCTATCAATAATCACATCGGTCTGTCCGTCATCACCAACCGACATTTAGGCCAGGGTACGTAGCACTCCTGACACTTGTTCTTCACCGCTTGGACTCATCCGCctatccctccctttctccagCTGGCATCTATTCTCCTCTCAACTTTTAGAGACGCTTCTGTTTGAATGGGAGAGCGACCACAAGTCCAAAGCAGtaataacataaaaaaaaaaaattgtctcgTCCTGTTTTCTGAGATTCAGTTCTCTTTTAAATCAAGTCATATCCACCAGCCCTTTTGGCAACCtagttgttttttaaaataagCACTAAGTACTGATAGATAGGATAACATACACCGTTACGTGTGTTTAAGTAAGATGCGACTGTCGTTTTTTTGTactttttctctcccccctctcactcaAAGTATGAATCcggtattttgttgtttttcactcaTCTGTTTTAAGGTTTAAGTAAATGCAAGCAGGGACAGAGTTTGCCATGAAGTCTTGCTCTAGACCTGGGTTTTTAGGGGGTGGGACCTAGTCCTCTACGAGACGCCGTTGACCAGGGTCTCGCTGGGCGTGGCCATGCCGTTGCTAGGGGAACGCTTGGAGGGCACCATGCGCTCATCCTTCTTGGCGCTGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1994940 lncRNA upstream 17403 44800551 ~ 44800959 (+) True G1742012
TU1994929 lncRNA upstream 24503 44789670 ~ 44793859 (+) True LOC118942934
TU1994922 lncRNA upstream 52457 44765688 ~ 44765905 (+) True G1741994
TU1994920 lncRNA upstream 54731 44763337 ~ 44763631 (+) True G1741992
TU1994917 lncRNA upstream 58664 44759479 ~ 44759698 (+) True G1741989
TU1994959 lncRNA downstream 13354 44837922 ~ 44839547 (+) True G1742029
TU1995092 lncRNA downstream 202178 45026746 ~ 45028648 (+) False G1742156
TU1995093 lncRNA downstream 203377 45027945 ~ 45028648 (+) True G1742156
TU1995105 lncRNA downstream 218298 45042866 ~ 45045645 (+) True G1742167
TU1995246 lncRNA downstream 405968 45230536 ~ 45244176 (+) True G1742298
XM_021577945.2 mRNA upstream 10608 44804798 ~ 44807754 (+) True LOC110500538
XR_005038614.1 mRNA upstream 22072 44790599 ~ 44796290 (+) False LOC118942934
XM_021577939.2 mRNA upstream 29432 44782219 ~ 44788930 (+) True LOC110500535
XM_021577938.2 mRNA upstream 71732 44727200 ~ 44746630 (+) True LOC110500532
XM_036957941.1 mRNA upstream 114641 44679665 ~ 44703721 (+) False chrnb1
XM_036956495.1 mRNA downstream 36643 44861211 ~ 44862751 (+) True ponzr6
XM_036957948.1 mRNA downstream 38627 44863195 ~ 44866199 (+) False LOC110500539
XM_036957949.1 mRNA downstream 38627 44863195 ~ 44867959 (+) False LOC110500539
XM_021577947.2 mRNA downstream 38627 44863195 ~ 44868544 (+) False LOC110500539
XR_002470122.2 mRNA downstream 38627 44863195 ~ 44868678 (+) False LOC110500539
TU1994553 other upstream 345798 44461382 ~ 44472564 (+) False LOC110500529
TU1994546 other upstream 366830 44446560 ~ 44451532 (+) True LOC110500528
TU1993553 other upstream 605132 44212786 ~ 44213230 (+) True G1740752
TU1993210 other upstream 1291636 43524736 ~ 43526726 (+) True G1740453
TU1993165 other upstream 1348037 43469818 ~ 43470325 (+) True G1740412
TU1995329 other downstream 619959 45444527 ~ 45448687 (+) True fcer1g
TU1995333 other downstream 660704 45485272 ~ 45493952 (+) True LOC110500870
TU1995371 other downstream 724549 45549117 ~ 45555589 (+) True si:dkey-38p12.3
TU1996084 other downstream 814728 45639296 ~ 45639742 (+) True G1743043
TU1996124 other downstream 882574 45707142 ~ 45709950 (+) True G1743077

Expression Profile