RNA id: TU1995388



Basic Information


Item Value
RNA id TU1995388
length 211
lncRNA type antisense_over
GC content 0.62
exon number 1
gene id G1742428
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 45540429 ~ 45540639 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCTGTGTCTGCAGCCGAGACACGATCTCCTTACGGGCCTTCATGACAGAGTCCAGTTTCCCAGTGACCATGATGGAGAGGCCCTGGTCCTTGGCCAGCGACAGCTCGATGTGAGCCCCCGTCCTCTGCATGATGTCCAGGCACACCTTGGCCTCCTCGCCCCCGTCACCAAACTGGCTGTTGTCCTTGTAGCGCCGCTCCTCCAGGGGCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1995387 lncRNA upstream 856 45539166 ~ 45539573 (+) True G1742427
TU1995386 lncRNA upstream 1709 45538406 ~ 45538720 (+) True G1742426
TU1995385 lncRNA upstream 3005 45537063 ~ 45537424 (+) True G1742425
TU1995384 lncRNA upstream 3437 45536754 ~ 45536992 (+) True G1742424
TU1995383 lncRNA upstream 4527 45535628 ~ 45535902 (+) True G1742423
TU1996035 lncRNA downstream 38669 45579308 ~ 45606291 (+) True G1743002
TU1996036 lncRNA downstream 39776 45580415 ~ 45580808 (+) False G1743003
TU1996037 lncRNA downstream 39776 45580415 ~ 45606695 (+) True G1743003
TU1996039 lncRNA downstream 40260 45580899 ~ 45591317 (+) False G1743004
TU1996044 lncRNA downstream 40945 45581584 ~ 45627145 (+) True G1743007
XM_036957965.1 mRNA upstream 23196 45485247 ~ 45517233 (+) False LOC110500870
XM_036957966.1 mRNA upstream 23196 45485247 ~ 45517233 (+) False LOC110500870
XM_036957967.1 mRNA upstream 23196 45485247 ~ 45517233 (+) False LOC110500870
XM_036957968.1 mRNA upstream 23196 45485247 ~ 45517233 (+) False LOC110500870
XR_005038617.1 mRNA upstream 27998 45485247 ~ 45512431 (+) False LOC110500870
XM_036957971.1 mRNA downstream 3877 45544516 ~ 45565742 (+) False si:dkey-38p12.3
XM_021577982.2 mRNA downstream 102222 45642861 ~ 45648249 (+) True si:dkey-19b23.7
XM_021577985.2 mRNA downstream 137022 45677661 ~ 45686049 (+) True LOC110500572
XM_021577986.2 mRNA downstream 147811 45688450 ~ 45702662 (+) True LOC110500573
XM_021577990.2 mRNA downstream 203971 45744610 ~ 45755368 (+) False LOC110500577
TU1995333 other upstream 46477 45485272 ~ 45493952 (+) True LOC110500870
TU1995329 other upstream 91742 45444527 ~ 45448687 (+) True fcer1g
TU1994553 other upstream 1067865 44461382 ~ 44472564 (+) False LOC110500529
TU1994546 other upstream 1088897 44446560 ~ 44451532 (+) True LOC110500528
TU1993553 other upstream 1327199 44212786 ~ 44213230 (+) True G1740752
TU1995371 other downstream 8478 45549117 ~ 45555589 (+) True si:dkey-38p12.3
TU1996084 other downstream 98657 45639296 ~ 45639742 (+) True G1743043
TU1996124 other downstream 166503 45707142 ~ 45709950 (+) True G1743077
TU1997842 other downstream 1623265 47163904 ~ 47167654 (+) True G1744645
TU1999487 other downstream 2554128 48094767 ~ 48095119 (+) True G1746210

Expression Profile