RNA id: TU1998396


Basic Information

Item Value
RNA id TU1998396
length 310
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1745175
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 47965321 ~ 47965630 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATACGGAATACTATCAAacgcttctcaaagatgccctctggtggtcaaactagcaataacttccagtaacagaagaaatggctgagaattaaatgacatgccacagaatgctgcagcagcacgCAGGGTGTGCCGCAGTgtgacacaacttttaaaggaggaaccactgtacacaGCTATCTGTATTGATGTCTCTAACTGAAGTTAAGATGTCATCCTTGAAAGAATAGGTCATAAATCCCTCTCTATTTGTCttctacctatctacctattgAGGAATATCAATTGCTTtgaagtgtatatacagtac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1998395 lncRNA upstream 122 47964959 ~ 47965199 (+) True G1745174
TU1997994 lncRNA upstream 3771 47960583 ~ 47961550 (+) True G1744793
TU1998314 lncRNA upstream 139181 47825079 ~ 47826140 (+) True G1745093
TU1998184 lncRNA upstream 332498 47631604 ~ 47632823 (+) True G1744969
TU1998181 lncRNA upstream 333436 47630628 ~ 47631885 (+) False G1744968
TU1999331 lncRNA downstream 16776 47982406 ~ 47982633 (+) True G1746056
TU1999338 lncRNA downstream 22984 47988614 ~ 47988923 (+) True G1746063
TU1999342 lncRNA downstream 25722 47991352 ~ 47991723 (+) True G1746067
TU1999425 lncRNA downstream 86185 48051815 ~ 48052076 (+) True G1746148
TU1999445 lncRNA downstream 99267 48064897 ~ 48065202 (+) True G1746168
XM_036958058.1 mRNA upstream 7304 47368679 ~ 47958017 (+) False LOC110500605
XM_036958068.1 mRNA downstream 417224 48382854 ~ 48414134 (+) False LOC110500610
XM_021578063.2 mRNA downstream 421687 48387317 ~ 48414134 (+) False LOC110500610
XM_036958069.1 mRNA downstream 421687 48387317 ~ 48414134 (+) False LOC110500610
XM_036958070.1 mRNA downstream 421689 48387319 ~ 48414134 (+) True LOC110500610
XM_021578094.2 mRNA downstream 1627756 49593386 ~ 49605877 (+) False LOC110500624
TU1997842 other upstream 797667 47163904 ~ 47167654 (+) True G1744645
TU1996124 other upstream 2255371 45707142 ~ 45709950 (+) True G1743077
TU1996084 other upstream 2325579 45639296 ~ 45639742 (+) True G1743043
TU1995371 other upstream 2409732 45549117 ~ 45555589 (+) True si:dkey-38p12.3
TU1995333 other upstream 2471369 45485272 ~ 45493952 (+) True LOC110500870
TU1999487 other downstream 129137 48094767 ~ 48095119 (+) True G1746210
TU1999753 other downstream 359470 48325100 ~ 48363926 (+) True G1746471
TU2000589 other downstream 1011696 48977326 ~ 48977758 (+) True G1747255
TU2001181 other downstream 1480209 49445839 ~ 49446626 (+) True G1747814
TU2001255 other downstream 1640523 49606153 ~ 49609580 (+) False LOC110500625

Expression Profile