RNA id: TU1999445


Basic Information

Item Value
RNA id TU1999445
length 306
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1746168
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 48064897 ~ 48065202 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctgtgccggctggagattataacagaacatggccaagatgttcaaaagttcataaatgaccagcagggtcaaataataataatcacaatagttgtcgagggtgcagcaagtcagcacctcaggagtaaatgtcagttggcttttcatagccgatcattaagagtatttctaccactcctgctgtctctagagagttgaaatcagcaggtctgggacaggtatcacgtccggtgaacaggtcagggttccatagccgcaggcagaacagttgaaactggtggactggggacagcaaggagtcatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1999425 lncRNA upstream 12821 48051815 ~ 48052076 (+) True G1746148
TU1999342 lncRNA upstream 73174 47991352 ~ 47991723 (+) True G1746067
TU1999338 lncRNA upstream 75974 47988614 ~ 47988923 (+) True G1746063
TU1999331 lncRNA upstream 82264 47982406 ~ 47982633 (+) True G1746056
TU1998396 lncRNA upstream 99267 47965321 ~ 47965630 (+) True G1745175
TU1999470 lncRNA downstream 16356 48081558 ~ 48081783 (+) True G1746193
TU1999522 lncRNA downstream 57740 48122942 ~ 48123141 (+) True G1746244
TU1999588 lncRNA downstream 114307 48179509 ~ 48179722 (+) True G1746310
TU1999589 lncRNA downstream 115532 48180734 ~ 48181266 (+) True G1746311
TU1999643 lncRNA downstream 156345 48221547 ~ 48221806 (+) True G1746365
XM_036958058.1 mRNA upstream 106880 47368679 ~ 47958017 (+) False LOC110500605
XM_036958068.1 mRNA downstream 317652 48382854 ~ 48414134 (+) False LOC110500610
XM_021578063.2 mRNA downstream 322115 48387317 ~ 48414134 (+) False LOC110500610
XM_036958069.1 mRNA downstream 322115 48387317 ~ 48414134 (+) False LOC110500610
XM_036958070.1 mRNA downstream 322117 48387319 ~ 48414134 (+) True LOC110500610
XM_021578094.2 mRNA downstream 1528184 49593386 ~ 49605877 (+) False LOC110500624
TU1997842 other upstream 897243 47163904 ~ 47167654 (+) True G1744645
TU1996124 other upstream 2354947 45707142 ~ 45709950 (+) True G1743077
TU1996084 other upstream 2425155 45639296 ~ 45639742 (+) True G1743043
TU1995371 other upstream 2509308 45549117 ~ 45555589 (+) True si:dkey-38p12.3
TU1995333 other upstream 2570945 45485272 ~ 45493952 (+) True LOC110500870
TU1999487 other downstream 29565 48094767 ~ 48095119 (+) True G1746210
TU1999753 other downstream 259898 48325100 ~ 48363926 (+) True G1746471
TU2000589 other downstream 912124 48977326 ~ 48977758 (+) True G1747255
TU2001181 other downstream 1380637 49445839 ~ 49446626 (+) True G1747814
TU2001255 other downstream 1540951 49606153 ~ 49609580 (+) False LOC110500625

Expression Profile