RNA id: TU1999588


Basic Information

Item Value
RNA id TU1999588
length 214
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G1746310
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 48179509 ~ 48179722 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccttccatcagcaagggcattgaagatgaaacttggctgggtctttcagcatgacaatgatcccaaacacaccgacatggtcctggagtggcctagccagtctccagatttcaaccccatagaaaatctttggagggagttgaaagtccgtgttgcccagcaacagcgccaaaacatcactgctctagaggagatctgcatggaggaatgggcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1999522 lncRNA upstream 56368 48122942 ~ 48123141 (+) True G1746244
TU1999470 lncRNA upstream 97726 48081558 ~ 48081783 (+) True G1746193
TU1999445 lncRNA upstream 114307 48064897 ~ 48065202 (+) True G1746168
TU1999425 lncRNA upstream 127433 48051815 ~ 48052076 (+) True G1746148
TU1999342 lncRNA upstream 187786 47991352 ~ 47991723 (+) True G1746067
TU1999589 lncRNA downstream 1012 48180734 ~ 48181266 (+) True G1746311
TU1999643 lncRNA downstream 41825 48221547 ~ 48221806 (+) True G1746365
TU1999671 lncRNA downstream 61781 48241503 ~ 48241734 (+) True G1746393
TU1999891 lncRNA downstream 350561 48530283 ~ 48530663 (+) True G1746601
TU1999957 lncRNA downstream 429242 48608964 ~ 48707627 (+) True G1746665
XM_036958058.1 mRNA upstream 221492 47368679 ~ 47958017 (+) False LOC110500605
XM_036958068.1 mRNA downstream 203132 48382854 ~ 48414134 (+) False LOC110500610
XM_021578063.2 mRNA downstream 207595 48387317 ~ 48414134 (+) False LOC110500610
XM_036958069.1 mRNA downstream 207595 48387317 ~ 48414134 (+) False LOC110500610
XM_036958070.1 mRNA downstream 207597 48387319 ~ 48414134 (+) True LOC110500610
XM_021578094.2 mRNA downstream 1413664 49593386 ~ 49605877 (+) False LOC110500624
TU1999487 other upstream 84390 48094767 ~ 48095119 (+) True G1746210
TU1997842 other upstream 1011855 47163904 ~ 47167654 (+) True G1744645
TU1996124 other upstream 2469559 45707142 ~ 45709950 (+) True G1743077
TU1996084 other upstream 2539767 45639296 ~ 45639742 (+) True G1743043
TU1995371 other upstream 2623920 45549117 ~ 45555589 (+) True si:dkey-38p12.3
TU1999753 other downstream 145378 48325100 ~ 48363926 (+) True G1746471
TU2000589 other downstream 797604 48977326 ~ 48977758 (+) True G1747255
TU2001181 other downstream 1266117 49445839 ~ 49446626 (+) True G1747814
TU2001255 other downstream 1426431 49606153 ~ 49609580 (+) False LOC110500625
TU2001256 other downstream 1426431 49606153 ~ 49609580 (+) True LOC110500625

Expression Profile