RNA id: TU1999753


Basic Information

Item Value
RNA id TU1999753
length 4999
RNA type TUCP
GC content 0.47
exon number 3
gene id G1746471
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 48325100 ~ 48363926 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaaaaaaaacAATCGACAGAACAAGAGAAAGCAACTCTCCTAACAAATGTATACCATTCAAATGACAGGGTGGTTCATCCAAACTCCCACTTTTCTGTAACTGCTTATTTCAATATCCCTTTTTATAATGGTTTTTTTGGCCATTATGTTAAACCAAAGCAGGTGTACAGAAACATAGGAAAAAAATATGCAAAGCTCAAATTAGAAGCGTGAGAAAAGACAGAATAGCTGGAGGTCTAGTGAGCGACTGCCATTCATGTTGGTGAAATAATACAAGCCCACTAATCCTCCCAAACCGACAGCtttcactcacgcacacacataaTCTGTGACATGGAAAAGTGTACATTTAGCGACCTAACATGACGCGATAACTGGTAAAAATGAATCTAAAACAATTCAAGCAGGGTCTTTTGGAAGACACTGAATGCAATTGTACCAGATCTACATCTTAAACTTGTGCAAGTACCTTCCACCTCCAGGAGACGGGACCCTAACAAAAAAATACTAGACTTATATGTATACTTCAATTTATAAAATACAAAACATTCCCTTTTTGCAATGCAATTTATGAATGTTTGGTAAATGAAGTAGCCATGTTTCCTATTCACTATTGCATATGAACATTATATCCACCAAATCTAAGTAACGTCACTGTACTTACAAAACACATGTCAAATGAAGCCAGGCGGCTCTCAAACCTGACCCTAAATATGTTTCCACTGACCACTCCTGGTCTCCCTAACCATGTCGAGAGCTTGGGACGATAAGGTTCTATCTACATTGTTGTCCAAATGTTGTCATTGACATAgtcttgttctgttcaatgttctctacctataaATTACTCTAAATAcccccaattcatgttgttacacTTAAAAGAATAAGATAAAAaattgctgacaccattcaaaccaatgagggtttGAAACTGTAcagccaattatctcagaatgGTCTTTTAGCAGATAGAGCCTTATCGTGCCAAGCTCTCGGTGTCTTAAACCTCTTAGTCGCTACTAATAATCATTCAAGGTCAATTTTGACAAATTATTGCACATCTTGACAGCTAACAAATACACTGTTGATATTGCAGAAGATCTTATCAAACTTGTCACTGGCTCACACACCGCCTTAGTACTCCAACCTTTTCTTAAATTCCCTTTCAAGCTTCTCTCATTTCCAATTTTAACTTTCTCAGCAATATACATTCACCTGTTCCTCTGAATTCTTGCTGGCTATTATCCTCGTTCACATTCTGGCAATGCCTGCTCACAGGCTCCACTGGTTCACGTCACAAGTCTATTGAATGCATTTTGTGGATGTCCTGAAAAACTACATTTTATCATTTTTGGGCTTAGATAATTAAGATATACCAATATCATATATTTAATTTTCTATGTATTGTGCATTGCAATATTGCAAAGAAACCAACATTGAAAAGCTTTGCTTGAAAAACGAAGATATTATATAGTTGTATACATGTAAAGAGTGAATGCATAGCAGGTGGAAAAATACATCCAAACTTTAtatattaaaggcccagtgcagtcaaaaatgtgaatatcctgtgttttatatatattttatatatatttttccacagtatgaggttggaataatactggggaattgtgaaaattatgataatgccattttaaTGTAAGAGCCTGAAATTTTGGTGGGATGGCGTTTTGGCCTGCCTGCcgacatcaccaggcagtataagttaatataccaataacaAAGATTTAAAAAACGCTCTACCAATAACATCTAGTTTTCAGGTTATGTAACCCTCCCATTAGGCTCGTTCAATTAGGCCCCTCActtagaccactcccagacagtcctagcaaaattcttgcttgagaaattgctctttgctaagacgcaatttgtttgttttttaaccattttaattaaaaaataaaacagtaaggtacttaattcttacacagaaattatttgatattgagatcaaAACAGCTGCATCGGGCCTTTTTAAAATTCTAGCATTTATTAAGAAAAATATGTTGGCTATAAAATGTTGAAAAGGCATCTTAAAAGCTTTCTATGAATATATAGCATTTGTATGAATGTACTGTGCATGTAACTAGATCTACTGTTCTTTTAAGCAAAGATCACTTAATTATGCTTTCAGAATCACTCTTTCCCCACAGCTGCTGGCTTCCACACCTGGGCTGAACTCTTTTTGGCCATGAACCTGGGCTTTGGAGCGGTGCTGCCCCCAGAGATAGACTCAGACTTTGCCGCTATGGGAAAGCTGGGCACCACGTAGGTACTGGGAGGTAGTGGCTGGTATGGGGCTTGGGGTGCTGCTTGGTAGGGGGGGCTATGGGCTGGCTGATAAGGACCTTGGGGGGTCTGTTGGTAAGAAGGGTTTTGAGCTTGCTGCTGGGGTTGATAAGGGGCTGGAGGGGCTTGTTTGTAAGGGGGATTATATGGATGTTGGTAAGGACCAGCAGGAACCTGCTGGTAGGGATTGTTAGATGGCTGGTAAGCATTAGGTGAGGCTGGGTGGTATGGACTATCATGCATGGGTGGTTGAGGGGTAATCCCGTAGAGCTGCTGGGGCTGCTGTGAATAGGGAGCATTCATTTGTCCAGCCGGCTGGACAGGGGCAGCTTGCTCATATCTTATTGGTTGGTTTTGGTTTGGAGGGACTGGGGCAGGCTTTGGTGCGGCGGCCTTGGCAGCCtcggcagcctccactgctggGCCATAAGTAAAGAGGGACGCATTGAGCTGATAAGGCTGATGTTTCATGACATCTATAACGGCAAGGGGTTTGCAGGCAGGTTTGCCTTTCCCTTTCTTTGCTTTGACCGCAGGGCTAGATGGAGGGGGTTGCTTAATGGCCCCTGGTGGGTAGGAAGGGGACTGTATGGGGTTGTAATTCGATGTAGGGGGAGCTCTGCAATTGGGCGAATATTTCCAAGGATGAGGTACGGAGGGAGAGGGCGACGTGGGCCTTGCCTTGTTTGCCTGCGCAGTGGCTGCCTGGGCTTGCTGAGCTGCCTGTGCAGTGGCTGCCAGCACAGTGTCCGAATCCACGACATACTTCTCCATACGAGACTGCCTCTTGGCGAACAAATCGGCTCCTTTCCCCCTAACCGCTGGCATCGACAAAGCCGAGCCCATTCCTCCTACTGGTGCCAAAACGCTTGCCATTGGATTGATGACGGGTGACGAGGACCTTTCGCCAAGTGTGTAAGAGTTAATTCGCTGTGGCGGAGGTGGAGGAGTAGAACAGGGAGCACTTTGTGGAGCATTCCAAGGTTTCGGAGAAGGTTGACACACTCTGTGCATCCGGGTCTGAGTATTCACTGGGGCTTGCTGTGGTTGTGGGGCCCAGGTACTTGTGTGTGTCTGAGGCTGTGCCTGAGCTGGGGCCCATGCATTCATAGGTGGCTGTAAGGGTGCCTGCTGTGGAGGTGGTTGTTGCCAGTTTTGCTGGGGTGGGGATTGGGTTGAAGGTGGTTGGACCCAAGGTGGCTGTGACCGGGCCTGATTCTGATCTGGGGCCCAGGCATTCATGGGTGGCTGTTCTTGCTCTTGAGATAACTGGGCCCATGGAGGCTGGACCTGAGCCTGAGCAGGTGCTGGGGCCCATGCATTCATAGGGGGTTGAGGCTGAGCTGGATGTTGGGGCTGAGCTTGTTGGGCCCAAGGTGGTTGTTGTGGCTGGGTATGGCTCTGTGGTGGTGTCCATGCATTCATTGGAGGCTGAGGTGATGACACCCAAGGTGGCTGAGGCTGGGCCTGGGGCCAAACCTGTTCTGGAGACTGAGGCTGAGGTTGTTTAGCCCAAGGTGCCTGGGGCTGTTGCTGTGCTTGTTCTTGAGGTTGAGCCCAAGGTGCCTGGGGCTGTTGCTGTTCTTGAGGTTGAACCCATTGGAGTTGTGACTGGGCAGGCGCTATAGCCCAAGAATTCATGGGTGGCTGAGGCTGAGGAGGAGGTGGTTGGGGAGTCACCCAAGGGAGCTGTGGTGGGGACTTACTTGGAGCTGGAGCCTGGTGCTTCATTTCAGCAGGTGGCCAAGTACTCACAAGTGGCTGCTGTGATGCCTGTGTTAGTGCCGGAGCCCAGGAACTCACTTGAGGCTCGGGTTGCGAATGAGGCTGAGTTGGTGAGGGACCATTTCCTCCCCAGGCTGGCACTTGCTGGGGCTGCTGCTGCTGTGCCTGGGACCCTGGGGGACTCCATGTGTGTTTGGCTGGAGAGGGGGGCTTGGCAGGAACAGGAGCTTCCTGGGGGGCAAGAGGAGGGGAGGGCTCTGGGGCCAGTTCTGGGGCGGACTCGGTCTCAAGGGCTGCAGCAGGTGCAGGGACGCTATTTTCAGCATGCAGTGGCAACTCCTGGTTGGCCAGCTCAGGCTGAGGGGACCAGGGTGGAGAGTTGGGGTTAATGATGGGTTTGGGAGCGACTGGTGGAGGCGTCTTATGCTTGACCCTTGGTGACTGGAGGAAGTTGCAAGCCTCAGCTCCCAAGCTAAGGTAGTCCTCTTCCGTGCATGACTCGGAATCCAACTTCTTGTCACTCCTGTTGAGGAGATTCAGAAGCTCGGGGTTGGGTGACACTTTGGGTGCTTGTTTGAAATTGAACATTGGCTTGCCCTTGAACCTGTTCCTTGTGTCCTGCAAGATCCCAGACTTGATTGCCGGCGTCGAAATGCGCTCGTCGCGTGAGGCAATCTGCTCTCCCTGACCCATCATCTCTTGGTTGCTCCCACTCACTGGGGGAGAAAACAGGGCGGGCATCTGGTTTTGTAATGAGAAGGGTTGGGCAGTTTGATTGCTCATGGAACTCTGCATTTCATTGGTTTGATGGTTGGCCATGCCATTCATGTTAGACGAGTACTGCTGAATATGCTGCTGTTGGtactcttgctgctggtggtgCTGCTGTTGATTATATTGTTGTTGCtgctggtactgctgctgctcgtactgttgttgttCATGCTGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1999671 lncRNA upstream 83366 48241503 ~ 48241734 (+) True G1746393
TU1999643 lncRNA upstream 103294 48221547 ~ 48221806 (+) True G1746365
TU1999589 lncRNA upstream 143834 48180734 ~ 48181266 (+) True G1746311
TU1999588 lncRNA upstream 145378 48179509 ~ 48179722 (+) True G1746310
TU1999522 lncRNA upstream 201959 48122942 ~ 48123141 (+) True G1746244
TU1999891 lncRNA downstream 166357 48530283 ~ 48530663 (+) True G1746601
TU1999957 lncRNA downstream 245038 48608964 ~ 48707627 (+) True G1746665
TU1999991 lncRNA downstream 292148 48656074 ~ 48656446 (+) True G1746698
TU1999994 lncRNA downstream 293862 48657788 ~ 48658323 (+) True G1746701
TU2000053 lncRNA downstream 370477 48734403 ~ 48734660 (+) True G1746753
XM_036958058.1 mRNA upstream 367083 47368679 ~ 47958017 (+) False LOC110500605
XM_036958068.1 mRNA downstream 18928 48382854 ~ 48414134 (+) False LOC110500610
XM_021578063.2 mRNA downstream 23391 48387317 ~ 48414134 (+) False LOC110500610
XM_036958069.1 mRNA downstream 23391 48387317 ~ 48414134 (+) False LOC110500610
XM_036958070.1 mRNA downstream 23393 48387319 ~ 48414134 (+) True LOC110500610
XM_021578094.2 mRNA downstream 1229460 49593386 ~ 49605877 (+) False LOC110500624
TU1999487 other upstream 229981 48094767 ~ 48095119 (+) True G1746210
TU1997842 other upstream 1157446 47163904 ~ 47167654 (+) True G1744645
TU1996124 other upstream 2615150 45707142 ~ 45709950 (+) True G1743077
TU1996084 other upstream 2685358 45639296 ~ 45639742 (+) True G1743043
TU1995371 other upstream 2769511 45549117 ~ 45555589 (+) True si:dkey-38p12.3
TU2000589 other downstream 613400 48977326 ~ 48977758 (+) True G1747255
TU2001181 other downstream 1081913 49445839 ~ 49446626 (+) True G1747814
TU2001255 other downstream 1242227 49606153 ~ 49609580 (+) False LOC110500625
TU2001256 other downstream 1242227 49606153 ~ 49609580 (+) True LOC110500625
TU2002232 other downstream 2234984 50598910 ~ 50603277 (+) False LOC110500883

Expression Profile