RNA id: TU2000411


Basic Information

Item Value
RNA id TU2000411
length 201
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G1747082
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 48793274 ~ 48793474 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtttcctccggcgcattggtgcggctggcttccgggttggatgtgcgctgtgttaagaagcagtgcggcttggatgggttgtgtatcggaggacgcatgactttcaacctccgtctctcccgagcccgtacgggagttgtagcgatgagacaagatagtagctactacaacaattggataccacgaaattggggagaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2000397 lncRNA upstream 12354 48780587 ~ 48780920 (+) True G1747068
TU2000067 lncRNA upstream 34004 48758897 ~ 48759270 (+) True G1746766
TU2000066 lncRNA upstream 34627 48758434 ~ 48758647 (+) True G1746765
TU2000053 lncRNA upstream 58614 48734403 ~ 48734660 (+) True G1746753
TU1999994 lncRNA upstream 134951 48657788 ~ 48658323 (+) True G1746701
TU2000439 lncRNA downstream 21808 48815282 ~ 48815484 (+) True G1747110
TU2000453 lncRNA downstream 41001 48834475 ~ 48873753 (+) True G1747123
TU2000468 lncRNA downstream 66338 48859812 ~ 48860354 (+) True G1747138
TU2000548 lncRNA downstream 121858 48915332 ~ 48917025 (+) False G1747214
TU2000546 lncRNA downstream 122050 48915524 ~ 48918035 (+) True G1747214
XM_036958068.1 mRNA upstream 379140 48382854 ~ 48414134 (+) False LOC110500610
XM_021578063.2 mRNA upstream 379140 48387317 ~ 48414134 (+) False LOC110500610
XM_036958069.1 mRNA upstream 379140 48387317 ~ 48414134 (+) False LOC110500610
XM_036958070.1 mRNA upstream 379140 48387319 ~ 48414134 (+) True LOC110500610
XM_036958023.1 mRNA upstream 835257 47753547 ~ 47958017 (+) True LOC110500605
XM_021578094.2 mRNA downstream 799912 49593386 ~ 49605877 (+) False LOC110500624
XM_036958085.1 mRNA downstream 799912 49593386 ~ 49605877 (+) True LOC110500624
XM_021578099.2 mRNA downstream 812625 49606099 ~ 49609714 (+) False LOC110500625
XM_021578097.2 mRNA downstream 812626 49606100 ~ 49609714 (+) False LOC110500625
XM_021578096.2 mRNA downstream 812651 49606125 ~ 49609714 (+) False LOC110500625
TU1999753 other upstream 429348 48325100 ~ 48363926 (+) True G1746471
TU1999487 other upstream 698155 48094767 ~ 48095119 (+) True G1746210
TU1997842 other upstream 1625620 47163904 ~ 47167654 (+) True G1744645
TU1996124 other upstream 3083324 45707142 ~ 45709950 (+) True G1743077
TU1996084 other upstream 3153532 45639296 ~ 45639742 (+) True G1743043
TU2000589 other downstream 183852 48977326 ~ 48977758 (+) True G1747255
TU2001181 other downstream 652365 49445839 ~ 49446626 (+) True G1747814
TU2001255 other downstream 812679 49606153 ~ 49609580 (+) False LOC110500625
TU2001256 other downstream 812679 49606153 ~ 49609580 (+) True LOC110500625
TU2002232 other downstream 1805436 50598910 ~ 50603277 (+) False LOC110500883

Expression Profile