RNA id: TU2001207


Basic Information

Item Value
RNA id TU2001207
length 1990
lncRNA type read_through
GC content 0.41
exon number 2
gene id G1747830
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 49459688 ~ 49585172 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTGGAGTATGTTGGTGTCTTTACTGTGAAGCACTCCCAGACTAGAGAGAACATCATGTACAATTTCCTTCAGAACACGAGGGTTGTCCTTTGGTAAGTGGTCTTTGATGTATTCATCCAAGGTGTATTCGCACAGCTGAAGAACAAGGTAGCCAAAGATTGTATCCTCGGCAAAGTCAACATATCTTACAATGTAGGGATTATCAAGTTTAGGAAGACGTAGGAATTCCTCCTCATTCTTGAGAACTTGATAGTTTAATCTGGTCATTCTCTTAACTGCTACTTCAGTGCCATCATCCCTGAGGCCCAAGAAGACCTCAGTTCCATCACTCCCCTTTGCTATGTAGAATTCTGCATCATCTACAATAGTGAGGTTTCCTACTTTATAAACTTTACTTTCATCCATGTTGGCAAGCTTCTCTAACTGTGTCTCCCACCGCTTGCTGACTTTGTGCCATTTGCGCTGTGATGGTGATGTGCCAGTGGTGGGGTGGAACGGCTTGACACTAGAACACTCATCAAGGCCAGATTCCTCAACAGGTGTAGATGAAGTATTGAAGGCTAAACAGGTTTTATTTTcttgtgtgtctgtctcttctTTTGGTATGTCTTGTTTTTCTGCCgttcccctcttcttcttcttcttcttcttcttcttggtttCTGACAAATGACTGTCTTTtgaatcttcacttgttgacttGGAGACAGAACGTTGTTTGTCTAAGGACATGTTTAGATCTCTCAGCTTTACTTTCAGGTTTTCATCCCTTCCCCAGTTAAGTAGTCCTTCAGGTACCGGAGTCAGTCCCAGAGAGCTGATGTAACCAGGAACACAACTAAATGTGTAAAGATCTGCTAGCAACGCATAGGCATACATCTTCAATTCAGAGGGATAACCCTCCCTCTGTGTGCATGGGACAATGTGCTTGCATATTTTCTCAAGGTCAGAGTTGCTCCAACGATCCTTGTCTTTTGTCTTCTGTGTGATGCCATAGAGCGTAACAATGATCAATGGCACGAGATAATCTTCTGTTTTACAGGAAAGCAGTTTCACTAACTCAGGAATTAGGGTAAGTGACACCTCATTAGGTATTTCCTTCATGGAGCAAACAACTTTATCCAAGGATTTCAATGCACCTGCCCTAAAAAGCTGAGGAATTGTAGACAGACGTTTGCTTACATCTTTAACATAGTAATCTAGTTTATTGGAGTCGTTCAACCATGTAATGGCTGTCTGGGGGTATTTTTCTGCATATGGACCTTCAATGTTAAAGCACATGTCAACCATAGTAAGGTGGGTTTGGGGGTTCACCTGTAGAAGGTTCTGGGCAAAGCTGCTGAACACTTCTGTTGGGGATGTTTGTTTTACTGCTTTCacaaaattaaaaaaaatcttgATTTTGGAAAATAACTCACTCTCTTCAGCAAAGTTTTCAATTATTGTGGCCAATTTCAGATCAATTGCAGGATGGATGCCATGATTTAGCCACATTACAGCTCCAGATTCGAGCAACTTCTTcacaacatcctctctgtcatgtGCTAATTGAATTGGAGAGAACTTTGGTTTTACAGGTAGGCCTGTTTCTACTAGACCATTTGGATCTGCCTTTGCTTCCAGTAATGTTGTCACTATATTCACTGGAACTTTATGCAGTCCAGCATAATGCAGTGGTGCTAAAAGTATTTTTGATGGTTTGTTGGGGTCAGCACCTTTTCCCAGAAGAAATGTACAAATCTCCTGATTTGCAAATGCAACAGCAGCAATTAAAGGGGTTACTTCATCTTGTAACTCAACACAAGGGTACAATGCATTGATGTCCTTGCCTCTAatcaatttcttcagcctctccAGATTATTATTAATAATGCACTTGATAATAGGATCTGTTGGCTCTGAGATAACCAGTTTGGTCAGGAGTTCTTGAAAATCAATCTTGTGTTCCATAATTCCTGACGATGTCATCTACACAGGGGCGTCTGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2001210 lncRNA upstream 18102 49456453 ~ 49457150 (+) True G1747831
TU2001185 lncRNA upstream 26149 49448831 ~ 49449103 (+) True G1747818
TU2001183 lncRNA upstream 27164 49447523 ~ 49448088 (+) True G1747816
TU2001169 lncRNA upstream 39270 49435775 ~ 49435982 (+) True G1747802
TU2001145 lncRNA upstream 58008 49417037 ~ 49417244 (+) True G1747780
TU2001208 lncRNA downstream 43408 49543651 ~ 49585172 (+) True G1747830
TU2001213 lncRNA downstream 63290 49563533 ~ 49581388 (+) True G1747832
TU2001304 lncRNA downstream 164561 49664804 ~ 49665123 (+) True G1747905
TU2001398 lncRNA downstream 168504 49668747 ~ 49668956 (+) True G1747966
TU2001407 lncRNA downstream 174992 49675235 ~ 49675508 (+) True G1747975
XM_036958068.1 mRNA upstream 1061118 48382854 ~ 48414134 (+) False LOC110500610
XM_021578063.2 mRNA upstream 1061118 48387317 ~ 48414134 (+) False LOC110500610
XM_036958069.1 mRNA upstream 1061118 48387317 ~ 48414134 (+) False LOC110500610
XM_036958070.1 mRNA upstream 1061118 48387319 ~ 48414134 (+) True LOC110500610
XM_036958023.1 mRNA upstream 1517235 47753547 ~ 47958017 (+) True LOC110500605
XM_021578094.2 mRNA downstream 93143 49593386 ~ 49605877 (+) False LOC110500624
XM_036958085.1 mRNA downstream 93143 49593386 ~ 49605877 (+) True LOC110500624
XM_021578099.2 mRNA downstream 105856 49606099 ~ 49609714 (+) False LOC110500625
XM_021578097.2 mRNA downstream 105857 49606100 ~ 49609714 (+) False LOC110500625
XM_021578096.2 mRNA downstream 105882 49606125 ~ 49609714 (+) False LOC110500625
TU2001181 other upstream 28626 49445839 ~ 49446626 (+) True G1747814
TU2000589 other upstream 497494 48977326 ~ 48977758 (+) True G1747255
TU1999753 other upstream 1111326 48325100 ~ 48363926 (+) True G1746471
TU1999487 other upstream 1380133 48094767 ~ 48095119 (+) True G1746210
TU1997842 other upstream 2307598 47163904 ~ 47167654 (+) True G1744645
TU2001255 other downstream 105910 49606153 ~ 49609580 (+) False LOC110500625
TU2001256 other downstream 105910 49606153 ~ 49609580 (+) True LOC110500625
TU2002232 other downstream 1098667 50598910 ~ 50603277 (+) False LOC110500883
TU2002231 other downstream 1099284 50599527 ~ 50603277 (+) True LOC110500883
TU2003188 other downstream 1616202 51116445 ~ 51133338 (+) True LOC110500674

Expression Profile