RNA id: TU2002036



Basic Information


Item Value
RNA id TU2002036
length 593
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G1748517
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 50357375 ~ 50358092 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATACTTGATTTAGCTTGTCTGTTACAATAGAACCAATTGACTAGTCCCCCCCAAAAGTGCTAAATCAGGCCCACCTCAAGTATTTGAAAGTATGTAACGTACCTGTATGTATTTCACCCAGGTAGAGATGCCATGAAATATAACGAATGCTCATCTGTGCCACAAAAACGCTTGAGCCGACAAGGCTACTGCAGTTCAAAGTGAACGACTTGAGGGCTGCGACTACTACTGTACATTTGTATTCTAGCACCATTACCCTCTTCCCTAATGCTCAGTGTCGCCACATACAGCTACCATTTTACTGTTAAAAATACCTGTCAATAAGAGCTTCTGTACATCATGAATTTAAACGAGTCCATGCCATTGTGATAGGCATGCAGTGCATttacaAACTTCCCCAAATTCCCAGAAATCCTGATTGGAGGAatcttccaactgggatttctggaaagttactggaattttgcaaccccaaACATCTTTAAAAAGGATCAGAATGTGCCAGTCATCATGACGGAATATGGTGCAGGTGGTATCATTCCTAGTTCTAGCATCTTTTGATGCTCCGAGACTGGCGTAGCCATGCTGAAGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2002010 lncRNA upstream 80003 50276716 ~ 50277372 (+) False G1748499
TU2002011 lncRNA upstream 80003 50276716 ~ 50277372 (+) True G1748499
TU2001995 lncRNA upstream 104809 50247456 ~ 50252566 (+) True G1748486
TU2001992 lncRNA upstream 110170 50244580 ~ 50247205 (+) True G1748484
TU2001986 lncRNA upstream 127600 50229311 ~ 50229775 (+) True G1748480
TU2002082 lncRNA downstream 17515 50375607 ~ 50415360 (+) True G1748560
TU2002100 lncRNA downstream 44529 50402621 ~ 50407729 (+) True G1748578
TU2002205 lncRNA downstream 175917 50534009 ~ 50536926 (+) True G1748657
TU2002238 lncRNA downstream 211172 50569264 ~ 50570060 (+) True G1748679
TU2002244 lncRNA downstream 229050 50587142 ~ 50587464 (+) True G1748685
XM_036958106.1 mRNA upstream 1658 50297060 ~ 50355717 (+) False LOC110500641
XM_036958104.1 mRNA upstream 1658 50304198 ~ 50355717 (+) False LOC110500641
XM_036958105.1 mRNA upstream 1658 50304198 ~ 50355717 (+) False LOC110500641
XM_036958109.1 mRNA upstream 1658 50304198 ~ 50355717 (+) False LOC110500641
XM_036958107.1 mRNA upstream 1658 50304199 ~ 50355717 (+) False LOC110500641
XM_036958114.1 mRNA downstream 123750 50481842 ~ 50485546 (+) False LOC110500645
XM_036958113.1 mRNA downstream 124719 50482811 ~ 50485546 (+) False LOC110500645
XM_036958115.1 mRNA downstream 124753 50482845 ~ 50486101 (+) False LOC110500645
XM_021578131.2 mRNA downstream 124754 50482846 ~ 50486101 (+) True LOC110500645
XR_002470135.2 mRNA downstream 131036 50489128 ~ 50494515 (+) False LOC110500647
TU2001255 other upstream 747795 49606153 ~ 49609580 (+) False LOC110500625
TU2001256 other upstream 747795 49606153 ~ 49609580 (+) True LOC110500625
TU2001181 other upstream 910749 49445839 ~ 49446626 (+) True G1747814
TU2000589 other upstream 1379617 48977326 ~ 48977758 (+) True G1747255
TU1999753 other upstream 1993449 48325100 ~ 48363926 (+) True G1746471
TU2002232 other downstream 240818 50598910 ~ 50603277 (+) False LOC110500883
TU2002231 other downstream 241435 50599527 ~ 50603277 (+) True LOC110500883
TU2003188 other downstream 758353 51116445 ~ 51133338 (+) True LOC110500674
TU2003175 other downstream 775997 51134089 ~ 51142008 (+) True gbrap
TU2003336 other downstream 1004594 51362686 ~ 51363380 (+) True G1749651

Expression Profile