RNA id: TU2002205


Basic Information

Item Value
RNA id TU2002205
length 2256
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id G1748657
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 50534009 ~ 50536926 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATACATTTgataatttatttttttacagagaGAGACCTGCTTCACCTCACCACATTGCTTTCCATGTCTTACATGAagaggtacagtgtgtgtgtgggtgtattacagtgtgtgtgtgtaagtctgtCGGTGGGTTGGCATTATGTCTGATGTTAGTGTGTTGGCAATGGCACATGGCAGTATAGATAGTGTTTGATAATGTGTCATTCAGTTCTCAACTCCAGGCCCCGGAGGGCCACAGGACTGCTGGTTTTCATTCATTTCAATTACATTATACAGTAGCTGGGGTCATCAGGGGCACTTTAGCTTAGTCTAACGCTTTGTCCCATTAGACAGCCTGGGACCTGCCTGTCCTCTCCTATTGGCCATGGAGTCTGAGCGGAGTGTCTGGTTGGCTGCTCCTGAGGCAGTGGCAGGGCTAGGATTgtTATGCCTCTGCCCCGTCCAGAGAAGACAGTGGTGAGTCCTTTAGAGACAGAGACGTGCTTCATAGGACGGGACTGAGATTGACACAGCTCAGTTAGCAGCTCaggactggagagagacaggagagtagtgcaacctacacacacacacacacacacacacacacacacgttattgtACACCACTATGTTACACACAGCAGCTCGACTGGACACATACACATTACTACTGTACTAGTATACcataactacactacactactactagaAGTATACTATAACTACACAACTACTACTAGTATAATATAACGACACTACGACAACTAGTAtactataactacactacagctaGTATACTATAATGACAAAAGTACAACTAGTATACTATAACGACACTACTACTTGTATACTATAACGATTCCTTATATTAAGTAAACCAGACGgcatcattttcttgttttttaaatttatggatagccagggacacactccaacacttagacataatttacaaacagccagatcagaggcaatagggatgaccatggatgttctcttgataagtgcatgaattggacaattttcctgtccagcgaagcattcaaaatgtaacaagtacttttgcgTTTCAGAGAAAATAtatggaataaaaagtacattattttctttaggaatgtagtgaagtaaaagtagtcaaaaatataaacagtaaagtacagataccccccaaaaatacttaAGTCGTACTTTCACGTATTTttaattaagtactttacaccactgctactagTATACTataactacactactactactactggtataccataactacactactactactagtatatGATAACTCCGTTACTAATACTAGTGTACTataactacactactactactagtatgctATAACTACAATACTACCACTAGTATACAATAACTGAACTATTGCTAGTATACTACaatgacactactactactactactaatagtagtATATTATAACTACACTACTGGTATACTACTGGTATACAACAACTAAACTACTCCTAGTACACTAACTACACTACCACTAGTATACCATAACTACACTACTCTAGTAGTATACTATAACTGCTCAACTACTACAATAGTATACTATAactacactactactggtagTATACTATAACTACACTAATAATACTAGTATACTataactacactactacacacattCTATAACtacactatcactactactagtACACTATAACTACACTTCTACTAGTATACTATaactaaactactactactagtatactATAACTGCACTCCTACATGTATACTATAACTACACTGCTACTAGTATACAGTAACGGCACTACTACTAGTATAAtataccaacactactactagtaTACTATAACGACATTACTACTAGTAGTAATATACTATAATGACACTGCTACCAGCAGTATACTATAATGGCACTACTACTGTTAGTATACTGTAACTAGTCTACTAGTCAGTGGTGGAAAacgtacccaattgtcatacttgagtaaaagtaaagataccttagaAAATGACTAAGGTATCTttgtgaaagtcacccagtaaaatactacttgattaaaagtctaaaagtatttggttttaaatatcctAAATTATCAAAACTAAATGTAattgttaaaatatacttaagtattgaaagtaaaagcataaatcatttcaaattccttatattaagcaaaccagacggcaccattttcttgtttttttatttacggatagccaagggcacactccaacactcagacatcatttacaaaataagcaTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2002082 lncRNA upstream 118649 50375607 ~ 50415360 (+) True G1748560
TU2002100 lncRNA upstream 126280 50402621 ~ 50407729 (+) True G1748578
TU2002036 lncRNA upstream 175917 50357375 ~ 50358092 (+) True G1748517
TU2002010 lncRNA upstream 256637 50276716 ~ 50277372 (+) False G1748499
TU2002011 lncRNA upstream 256637 50276716 ~ 50277372 (+) True G1748499
TU2002238 lncRNA downstream 32338 50569264 ~ 50570060 (+) True G1748679
TU2002244 lncRNA downstream 50216 50587142 ~ 50587464 (+) True G1748685
TU2002125 lncRNA downstream 55166 50592092 ~ 50596540 (+) True LOC110500658
TU2002262 lncRNA downstream 80501 50617427 ~ 50617656 (+) True G1748703
TU2002263 lncRNA downstream 81360 50618286 ~ 50618774 (+) True G1748704
XM_036958116.1 mRNA upstream 3818 50519031 ~ 50530191 (+) True LOC110500882
XM_036958117.1 mRNA upstream 4043 50519018 ~ 50529966 (+) False LOC110500882
XM_021578135.2 mRNA upstream 25908 50505238 ~ 50508101 (+) True LOC110500651
XR_005038625.1 mRNA upstream 39492 50489128 ~ 50494517 (+) False LOC110500647
XR_005038626.1 mRNA upstream 39492 50489128 ~ 50494517 (+) False LOC110500647
XM_021578142.2 mRNA downstream 25975 50562901 ~ 50578867 (+) False LOC110500656
XM_021578141.2 mRNA downstream 25976 50562902 ~ 50578867 (+) True LOC110500656
XM_021578143.2 mRNA downstream 55120 50592046 ~ 50598188 (+) False LOC110500658
trnaa-cgc-5 mRNA downstream 61617 50598543 ~ 50598614 (+) True trnaa-cgc-5
XM_036958121.1 mRNA downstream 61873 50598799 ~ 50615280 (+) False LOC110500883
TU2001255 other upstream 924429 49606153 ~ 49609580 (+) False LOC110500625
TU2001256 other upstream 924429 49606153 ~ 49609580 (+) True LOC110500625
TU2001181 other upstream 1087383 49445839 ~ 49446626 (+) True G1747814
TU2000589 other upstream 1556251 48977326 ~ 48977758 (+) True G1747255
TU1999753 other upstream 2170083 48325100 ~ 48363926 (+) True G1746471
TU2002232 other downstream 61984 50598910 ~ 50603277 (+) False LOC110500883
TU2002231 other downstream 62601 50599527 ~ 50603277 (+) True LOC110500883
TU2003188 other downstream 579519 51116445 ~ 51133338 (+) True LOC110500674
TU2003175 other downstream 597163 51134089 ~ 51142008 (+) True gbrap
TU2003336 other downstream 825760 51362686 ~ 51363380 (+) True G1749651

Expression Profile