RNA id: TU2003756


Basic Information

Item Value
RNA id TU2003756
length 2170
lncRNA type intronic
GC content 0.38
exon number 2
gene id G1750013
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 52072230 ~ 52076431 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCTCTCTATCTTCATCTTTCTGTCGTTTCAtttctctatcttcctctttctatcgtTTCatctctctatcttcctctttctatctcttcatctctctatcttcctctttctatatcttcatctctctatcttcctcatctctctattttcctctttctatctcttcatctcaccctcttcctctttctatctcttcatctctctatcttcctcatctctctatcttcctctttctatctcttcatctctctatcttcctctttctatcgtttcatctctctatcttcctatttctgttgtttcatttctctatcttcctctttctgtcgtttcatctctctatcttcctctttctatcccttcatctctctatcttcaTCTTTCTATCTCTTCATTgctctatcttcctctttctatctcttcatctctctatcttcctctttctatctcttcatctctctattttcctctttctatctcttcatctcaccctcttcctctttctatctcttcatctctctatcttcctcatctctctatcttcctctttctatctcttcatctctctatcttcctctttctatcgtttcatctctctatcttcctatTTCTGTCGTTTCATTTCTccatcttcctctttctgtcgtttcatctctctatcttcctctgtctatcgtttcatctctctatcttcctctttctatcgtttcatctctctatcttcctctataATTTcacctctctatcttcctctttctgtcgtttcatctctctatcttcctctttctatcactccatctctctatcttcctctttctgtcgtttcatctctctatcttcctctgtcTATCATTTCACCTCTCGATCTTCCTCTGTCTATCATTTCATCTCgctatcttcctctttctatctcttcatctctctatcttcctctgtctatcgtttcatctctctatcttcctctttctatcgtttcatctctctatcttcctctatcGTTTcacctctctatcttcctctttctgtcgttTCATTTCTCTATCTTACTATcgtttcatctctctatcttcctctattGTTTCAtatctctatcttcctctttctatcgtTTCACCactctatcttcctctttctgtcgtttcatttctctatcttcctctttctgtcgttTCATCTCTATATCTTCCTCTGTCTATCGTTTCACCTCTCGATACTCCTCTGTCTATCatttcatctctctatcttcctctttctatccctTAATCgctctatcttcctctttctatctcttcatctcgctatcttcctctttctatctcttcatctctctatcttcctctttctctctcttcatctctctatcgtcctctttctatctcttcatctctctatcttcctctttctatctcttcatctctctatcttcctctttctatctcttcatctctctatcttcctctttctatctcttcctctctctatcttcctctttctatctcttcatctctctatcttcctctttctatctcttcatctctctatcttcctcatctctctatcttcctctttctatctcttcatctctccctcttcctctttctatcccttcatctctctatcttcctctttctatcgtttcatctctctatcttcctctttctatcgtttcacctctctatcttcctctttctgtcgtttcatttctctatctttctctttctatcgtttcatctctctatcttcctctattGTTTCAtatctctatcttcctctttctatcgtTTCACCactctatcttcctctttctgtcgtttcatttctctatcttcctctttctgtcgttTCATCTCTATATCTTCCTCTGTCTATCGTTTCACCTCTCGATACTCCTCTGTCTATCatttcatctctctatcttcctctttctatccctTAATCgctctatcttcctctttctatctcttcatctcgctatcttcctctttctatctcttcatctctctatcttcctctttctctctcttcatctctctatcgtcctctttctatctcttcatctctctatcttcctctttctatctcttcatctctctatcttcctctttctatctcttcatctctctatcttcctctttctatctcttcatctctccctcttcctctctctat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2003688 lncRNA upstream 104349 51967271 ~ 51967881 (+) True G1749949
TU2003623 lncRNA upstream 198891 51872583 ~ 51873339 (+) True G1749888
TU2003597 lncRNA upstream 242427 51829224 ~ 51829803 (+) True G1749864
TU2003590 lncRNA upstream 251274 51820653 ~ 51820956 (+) True G1749858
TU2003559 lncRNA upstream 291470 51777711 ~ 51780760 (+) True G1749836
TU2003771 lncRNA downstream 17345 52093776 ~ 52093990 (+) True G1750028
TU2003775 lncRNA downstream 22771 52099202 ~ 52099407 (+) True G1750032
TU2003787 lncRNA downstream 35428 52111859 ~ 52112224 (+) True G1750043
TU2003790 lncRNA downstream 39141 52115572 ~ 52115952 (+) True G1750046
TU2003793 lncRNA downstream 43666 52120097 ~ 52120307 (+) True G1750049
XM_021578200.2 mRNA upstream 517400 51509283 ~ 51554830 (+) False LOC110500695
XR_005038634.1 mRNA upstream 517400 51509283 ~ 51554830 (+) False LOC110500695
XM_021578199.2 mRNA upstream 565085 51501598 ~ 51507145 (+) False LOC110500694
XM_036958139.1 mRNA upstream 565085 51501598 ~ 51507145 (+) True LOC110500694
XM_021578195.2 mRNA upstream 586342 51457228 ~ 51485888 (+) True LOC110500691
XM_021578207.2 mRNA downstream 885701 52962132 ~ 52963960 (+) True LOC110500700
XM_021578208.2 mRNA downstream 893077 52969508 ~ 52971316 (+) True LOC110500701
XM_021578209.2 mRNA downstream 912931 52989362 ~ 52996635 (+) True LOC110500702
XM_021578230.2 mRNA downstream 1029126 53105557 ~ 53139436 (+) False LOC110500711
XM_021578229.2 mRNA downstream 1029129 53105560 ~ 53139219 (+) False LOC110500711
TU2003334 other upstream 621755 51418969 ~ 51450475 (+) False G1749650
TU2003336 other upstream 708850 51362686 ~ 51363380 (+) True G1749651
TU2003175 other upstream 930222 51134089 ~ 51142008 (+) True gbrap
TU2003188 other upstream 938892 51116445 ~ 51133338 (+) True LOC110500674
TU2002231 other upstream 1468953 50599527 ~ 50603277 (+) True LOC110500883
TU2003773 other downstream 18278 52094709 ~ 52095105 (+) True G1750030
TU2003797 other downstream 114769 52191200 ~ 52197007 (+) True G1750050
TU2005665 other downstream 886018 52962449 ~ 52972383 (+) False G1751699
TU2005666 other downstream 886018 52962449 ~ 52972383 (+) False G1751699
TU2005667 other downstream 886018 52962449 ~ 52972383 (+) False G1751699

Expression Profile