RNA id: TU2005669


Basic Information

Item Value
RNA id TU2005669
length 1819
RNA type TUCP
GC content 0.41
exon number 4
gene id G1751699
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 52962449 ~ 52972383 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGACTTCTTGTTTTGTCTTTGGTGTTAAAGTGGGCGAAAGTGGTATTTGGTATAACGTGCGATAGTTTCAGTGACGGTGTTCGGTCAGTCTGACAGTAAAGATGCCATTGTGTGGAGGAACAACTGGGCCAAAGGATGCCACTGAGGAGGTGCAGAAGATTTGTGATGAGATGAAGCCGCATGCAGAGCAGAAAACGGGGAGGAATTTTGACGTTTTCACAGCGAAAATTTACAAGACTCAGTTGGTGGCAGGGACCAACTTCTTCATCAAGGTTCATGTTGGTGGTGAAGACCATGTCCACCTGCGCGTGTATAAAATGCTGCCACACGCCGGAAGCAAACTGGAGCTGACCAGCCTGCAGGAGTCCAAAGCCCACAGCGACCCCATCGAATACTTCTGATTAaccctgacctttgaccccaTCAAGTACTTCTAATGACCCCTGTGACCCAGCCGCAGTCCGAGCCGAACCCCGGTGCCTACCCTACCCAATACACCACAGCCTCCTTTCCCTCCACATAATAGATCTGTGGTCATTCTACAGCCCAGGTAGCCTTTTAATATCAGTTTTCAGTGTTTCTTAAAATGATTTTATAATATGTAGCTGATGGGAAACCTTCATGTATGAAGGGAAATTGAAATAATGAATGAGCTCCAAACATGAATGTATATTTGCCTACTCAATTAAAGACAATATACTATTTTGCCACATGGTTAATAAATCATAATACTTTGTAACGAAGATTAATTCCTTGTCCATTATCGATGGTCTTTGAACACAATTTCAAACCTAGATCAACCCATCGCCCTCAGGTGACAGGTTAACACCAGCCTGGaaacaagtccctgcagcaatgttccaacatttagtggaaagaaGAGTGAAGTCTGTTACAGCAGCAACgggggggacaaactccatattaatgcccatgattttagaatgagatgtttgatgagcaggtgtccacatacttttggtcatgtggtgtatttattttaaatgttatgcatacatttgtttacatccctgttagtgagcatttccccttttccaagaaaatccatccaatggacaggtgaggcatatcaagaagctgatttaaataAAAGGATCcgtacacaggtgcaccttgtgctgggaacaataaaaggccactctaaaatgtgcagttttgtcacacaccacaatgtcaccgatgtctcaggttttgagtgagcatgcaattggcatgctgactacaggaatgtccatcagagctgttgccagataattcaatgttaatttctctaccataagatgcctccaatgtcattttagagaatttgtcagtacgtcctattactctgacatttcacagtcttaaaataaagtggtgatcctaactgacctacgacagggcatttttactaggtttgaatgtcgggaattgtgaaaaactgagtttaaatgtatttggctaaagtgtatgtaaacttccgacttaaactgtaagTAGTTTTTTGGCGTatctactttactatttatatttttgactacttttacttcactacattcctaaagaaaataatgtactttttacattttccctgacacccaaaagtactcattacatttatttgaaatgcttagcaggacaggaaaatattTAAACTCATGCAGTAATCAagagtcatccctactgcctctgatcaggcAGACTCATGAAACAcacatgcttaatttgtaaattatgtctgagcgtTGTagtgagcccctggctatccgtaatggttttgttttttgtgtgtgccatctggtttgcttaatataagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2005647 lncRNA upstream 72149 52889765 ~ 52890300 (+) True G1751687
TU2005605 lncRNA upstream 156935 52805257 ~ 52805514 (+) True G1751646
TU2005604 lncRNA upstream 159998 52802224 ~ 52802451 (+) True G1751645
TU2005601 lncRNA upstream 161097 52801136 ~ 52801352 (+) True G1751642
TU2005597 lncRNA upstream 167171 52795049 ~ 52795278 (+) True G1751638
TU2005672 lncRNA downstream 1955 52974338 ~ 52975041 (+) True G1751700
TU2005699 lncRNA downstream 3535 52975918 ~ 52976149 (+) True G1751727
TU2005701 lncRNA downstream 5386 52977769 ~ 52977970 (+) True G1751729
TU2005710 lncRNA downstream 28291 53000674 ~ 53001197 (+) True G1751738
TU2005711 lncRNA downstream 34753 53007136 ~ 53007397 (+) True G1751739
XM_021578200.2 mRNA upstream 1407619 51509283 ~ 51554830 (+) False LOC110500695
XR_005038634.1 mRNA upstream 1407619 51509283 ~ 51554830 (+) False LOC110500695
XM_021578199.2 mRNA upstream 1455304 51501598 ~ 51507145 (+) False LOC110500694
XM_036958139.1 mRNA upstream 1455304 51501598 ~ 51507145 (+) True LOC110500694
XM_021578195.2 mRNA upstream 1476561 51457228 ~ 51485888 (+) True LOC110500691
XM_021578209.2 mRNA downstream 16979 52989362 ~ 52996635 (+) True LOC110500702
XM_021578230.2 mRNA downstream 133174 53105557 ~ 53139436 (+) False LOC110500711
XM_021578229.2 mRNA downstream 133177 53105560 ~ 53139219 (+) False LOC110500711
XM_021578228.2 mRNA downstream 133178 53105561 ~ 53139219 (+) True LOC110500711
XM_021578232.2 mRNA downstream 176436 53148819 ~ 53159292 (+) False si:dkey-28a3.2
TU2003797 other upstream 765442 52191200 ~ 52197007 (+) True G1750050
TU2003773 other upstream 867344 52094709 ~ 52095105 (+) True G1750030
TU2003752 other upstream 883447 52071600 ~ 52079002 (+) True G1750012
TU2003334 other upstream 1511974 51418969 ~ 51450475 (+) False G1749650
TU2003336 other upstream 1599069 51362686 ~ 51363380 (+) True G1749651
TU2005860 other downstream 279366 53251749 ~ 53256601 (+) False LOC110500722
TU2006819 other downstream 1234315 54206698 ~ 54307490 (+) True LOC110500735
TU2007280 other downstream 2029196 55001579 ~ 55010870 (+) False G1753100
TU2007277 other downstream 2035943 55008326 ~ 55011678 (+) False G1753100
TU2007265 other downstream 2036051 55008434 ~ 55011678 (+) False G1753100

Expression Profile