RNA id: TU2005716


Basic Information

Item Value
RNA id TU2005716
length 1766
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G1751741
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 53009560 ~ 53011461 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAACTTTGTCTCCTTTATTGACTGTTGTTTCACATTGACAAGATAATGCAGAGTTTGAAGCTTTAAGTGCTTAGAGTCTCTCTAATGGAAGAAAACTACTGGACATGTGCAATCTTTATCAACCCGACACACTCAATTACTAGTGATTCAGTAGTTAACACTAAGTCAAGACTTCCAAACAGTGAGAAATACTATTGTACCAGAAATTGTTATTTATCTGAACAGCAAAAAAGACTTGCAGCTTAACAGTGAGGGGTCACTTTAGGCTGAACAACTACAGACACAGCTTAGTTATTAAGGCAGCATTATAGTCACTCAGAGAGGTATTAGGCAGAgaaggtggaggagagaaggcTTAGTTTGTTGGACTATATGAAGGATCATTTTCCAACACTGGAACAACGTTTTGAGGATCTACTGATGGGATCATTCTAAACAAAACGCAGCTTATAGCAGAAAGTATTTCAGCAATAAGGATTGTGTGTGGGCTACCCAAAACACAAGCATTAATAACATGCACAAATTACTACATtcgacatacagacatacattgAGCAAACAGTTTTATAACATCAAGGATCACGCATGTTAACCAAGTCCCTTCAACTTGAGTGGTTATTTGGTGCAGATATGAGTAAAGAGGTGGTCCTTGGCAGGCCGAACCAGTAGTGTAGAATCACAGTGTCTATGTGAGAAGAACGTGCTTATTTTGATAAGGCTCTATGTCCCACCATGTCTCATTCTTGGAAGACATGGTTTTGGTACCATTAGACAGTGGTGAGGTTTCCAGCTACTTGTTGGCCCCACTGACTGTTAAAGGGTCTATTCTCTAACCATGTTAGCTTAAATGATGGTGAACAGTGTTATTCATGTTATTCATGTTGCACAAGCCAGTTGACTATGCATTGCTGGTACATGTGAGAAGGTGAATGCTGATTTTGAATTAACCCATTGAGACGGTGAATGCTGATTTTGTATTAGCCCATTGAGAAGGTGAATGCTGATTTTGTATTAGCCCATTGAGAAGGTGAATGCTGATTTGTAGCCCATTGAGAAGGTGAATGCTGATTTTGAATTCGCCCATTGAGAAAATGAATGCTGATTTTGAATTCGCCCATTGAGAAGATGAATGCTGATTTGTATTAGCCCATTGAGAAGGTGAATGCTGATTTGTATTAGCCCATTGAGAAGGTGAATGCTGATTTGTATTAGCCCATTGAGAAGGTGAATGCTGATTTTGTATTAGCCCATTGAGAAGGTGAATGCTGATTTTGAATTCGCCCATTGAGAAGATGAATGTTGATTTTGTATTAGCCCATTGAGAAGGTGAATGCTGATTTTGTATTAGCCCATTGAGAAAATGAATGCTGAATGTCGAGGTTGAAAGTGGTATCAGGTTATTGGCCAACACGTAGCCGGACAGGGATTGCTACATGTATAGTCAATCATCAACTAATACTGACCACACTGAAATGACACAATGAAAATGTACTAGTTACAGGGAGCTTTCAGGTTTCTAAACCATTTCTCAAGTTAAAATGGTTTTTGTGGAACAGCCAGAGGCAAAACCAGAAGCCGGGGCTGTGGAAAAACCAGAGGTTGGTTTTAGGCCTGGGGTTTATTGGCGAGGATCGTCTGGGGCAGGGATCCTTTCCAGGCTGGGCTCCATGCCCCAGATCTCCCGGGCGTACTGGGAGATAGTGCGGTCGCTAGAGAATTTACCACAACCAGCAATGTTGTGGATCACCATCTTGGTCCATTCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2005711 lncRNA upstream 2163 53007136 ~ 53007397 (+) True G1751739
TU2005710 lncRNA upstream 8363 53000674 ~ 53001197 (+) True G1751738
TU2005701 lncRNA upstream 31590 52977769 ~ 52977970 (+) True G1751729
TU2005699 lncRNA upstream 33411 52975918 ~ 52976149 (+) True G1751727
TU2005672 lncRNA upstream 34519 52974338 ~ 52975041 (+) True G1751700
TU2005744 lncRNA downstream 31855 53043316 ~ 53043540 (+) True G1751759
TU2005745 lncRNA downstream 32731 53044192 ~ 53044412 (+) True G1751760
TU2005746 lncRNA downstream 33256 53044717 ~ 53044917 (+) True G1751761
TU2005749 lncRNA downstream 38769 53050230 ~ 53050461 (+) True G1751764
TU2005753 lncRNA downstream 49887 53061348 ~ 53062482 (+) True G1751766
XM_021578209.2 mRNA upstream 12925 52989362 ~ 52996635 (+) True LOC110500702
XM_021578208.2 mRNA upstream 38244 52969508 ~ 52971316 (+) True LOC110500701
XM_021578207.2 mRNA upstream 45600 52962132 ~ 52963960 (+) True LOC110500700
XM_021578200.2 mRNA upstream 1454730 51509283 ~ 51554830 (+) False LOC110500695
XM_021578230.2 mRNA downstream 94096 53105557 ~ 53139436 (+) False LOC110500711
XM_021578229.2 mRNA downstream 94099 53105560 ~ 53139219 (+) False LOC110500711
XM_021578228.2 mRNA downstream 94100 53105561 ~ 53139219 (+) True LOC110500711
XM_021578232.2 mRNA downstream 137358 53148819 ~ 53159292 (+) False si:dkey-28a3.2
XM_021578233.2 mRNA downstream 137358 53148819 ~ 53159292 (+) False si:dkey-28a3.2
TU2005667 other upstream 37177 52962449 ~ 52972383 (+) False G1751699
TU2005860 other downstream 240288 53251749 ~ 53256601 (+) False LOC110500722
TU2006819 other downstream 1195237 54206698 ~ 54307490 (+) True LOC110500735
TU2007280 other downstream 1990118 55001579 ~ 55010870 (+) False G1753100
TU2007277 other downstream 1996865 55008326 ~ 55011678 (+) False G1753100
TU2007265 other downstream 1996973 55008434 ~ 55011678 (+) False G1753100

Expression Profile