RNA id: TU2073513


Basic Information

Item Value
RNA id TU2073513
length 770
lncRNA type antisense_over
GC content 0.43
exon number 1
gene id G1812491
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 42688210 ~ 42688979 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTCTCTGGACTGGTTTTCTCCTTTTACGTCCAGCATACATGATATGGCTTTTTTGCAAGTCCGATGAATCTCCCCAAAAATATTGGTGAAGGCTACAGTTCCCTTCGAGCTACATAGGCTACAGTCGACAGTTAAACTAATCCATCAGATGAAACACGTAAACACATTAGCGAGAGGACAacgacaaaaacaacaaataGTCGCACTTTTAGTTTATTTTATCCTTCAGCTGTGCGCAGATCCAGAGATGGGTTAagaaatataatttatataaatgAATGGCATTGTTGCGTACTCAGAATATCATCCGTTGAAATGCATACAATTTGCAATACTGTTTACAGTCCATCGAGATGCTAAATTAGTCTGCAAAACAATGCTTCAACCCAATATAAAACCCAAGTAATTAATCTCATCGTCTAGCGGAATGGTGGTCTAGATGTGTAGTGCCGGTGCGCTTTGCAAACCGCAAACCGCAATCCCCTTCCATGGTAGCTTGCACCTTTCAAATTCTTCCCAGGCTATTTTTTCATATTTTACCCTGAGAATAATGTGACAAACGTTTGGACAATTATTGTATCTACTGTATTAGTCCTATGCTTAACGTCCTCTTTTCCCAATTATCTCGTCAAATTCGGCCACGCGCATCTCCCTGCTTGAGTCCAGATTTGGGCGGGCACGCGCACCAGAGGTCAACGGGGAACCGAAAATCTCCTGGAAACACATGGGAGCGCGGCAATGTTTGCGAGTTCCCGAGCGGCCCGTTTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2073401 lncRNA downstream 26280 42661578 ~ 42661930 (-) True G1812395
TU2073353 lncRNA downstream 79710 42607591 ~ 42608500 (-) True G1812352
TU2073345 lncRNA downstream 83272 42604703 ~ 42604938 (-) False LOC110502155
TU2073337 lncRNA downstream 97076 42589367 ~ 42591134 (-) True G1812346
TU2073335 lncRNA downstream 99655 42588303 ~ 42588555 (-) True G1812344
TU2073542 lncRNA upstream 7243 42696222 ~ 42696512 (-) True G1812495
TU2073547 lncRNA upstream 13751 42702730 ~ 42703286 (-) False G1812500
TU2073548 lncRNA upstream 13751 42702730 ~ 42703286 (-) False G1812500
TU2073551 lncRNA upstream 13751 42702730 ~ 42703286 (-) True G1812500
TU2073558 lncRNA upstream 24289 42713268 ~ 42713577 (-) True G1812507
LOC110502155 mRNA downstream 82442 42603998 ~ 42605768 (-) False LOC110502155
XM_021579753.2 mRNA downstream 84761 42592218 ~ 42603449 (-) True LOC110501896
XM_036959343.1 mRNA downstream 788470 41798454 ~ 41899740 (-) True LOC110502152
XM_021579998.2 mRNA downstream 921032 41764963 ~ 41767178 (-) True LOC110502131
XM_021579743.2 mRNA downstream 944386 41702596 ~ 41743824 (-) True LOC110501888
XM_021579754.2 mRNA upstream 51640 42740619 ~ 42748559 (-) False LOC110501897
XR_005038838.1 mRNA upstream 52279 42741258 ~ 42748561 (-) False LOC110501897
XR_005038839.1 mRNA upstream 52279 42741258 ~ 42748561 (-) False LOC110501897
XR_002470270.2 mRNA upstream 52279 42741258 ~ 42748577 (-) True LOC110501897
XM_036959351.1 mRNA upstream 81274 42770253 ~ 42797492 (-) False LOC110501898
TU2073410 other downstream 10450 42677257 ~ 42677760 (-) True G1812404
TU2073346 other downstream 83190 42604703 ~ 42605020 (-) True LOC110502155
TU2073040 other downstream 298937 42386822 ~ 42389273 (-) True G1812079
TU2071948 other downstream 1082979 41604974 ~ 41605231 (-) True G1811042
TU2071828 other downstream 1222563 41447899 ~ 41465647 (-) True LOC110501886
TU2075666 other upstream 1821428 44510407 ~ 44553420 (-) True LOC110502171
TU2075825 other upstream 1984468 44673447 ~ 44673888 (-) True G1814480
TU2077141 other upstream 3149771 45838750 ~ 45840982 (-) True G1815615
TU2078613 other upstream 4536572 47225551 ~ 47226646 (-) True G1816841
TU2078705 other upstream 4712143 47401122 ~ 47402047 (-) True G1816929

Expression Profile