RNA id: TU2174330


Basic Information

Item Value
RNA id TU2174330
length 1688
RNA type TUCP
GC content 0.45
exon number 4
gene id G1901072
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 10005372 ~ 10012354 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCATTTTAACCCAATATAGGACTCCATTCTGTTGTGGGAACAACGCAATAAATAAGGACACGAGACCAGTTTCACATTTAAACATTAGCTGTTGTATCAAAGGTAATTTGTAGGAGCCATGGCCCGTACCAAGCAGACAGCCCGTAAATCTACTGGAGGCAAAGCCCCACGTAAGCAGCTGGCCACCAAAGCTGCCCGCAAGAGTGCCCCTTCTACTGGTGGGGTCAAGAAGCCCCATCGCTACAGACCTGGTACTGTGGCCCTGCGTGAGATCCGTAGGTACCagaagtccactgagctgctgatcCGCAAGCTGCCCTTCCAGCGCCTGGTGAGAGAAATCGCTCAGGACTTCAAGACTGACCTGCGTTTCCAGAGTGCAGCTATTGGAGCCCTGCAGGAGGCCAGCGAGGCTTACCTGGTTGGTCTGTTTGAGGACACCAACCTGTGCGCCATCCACGCCAAGCGTGTCACCATCATGCCCAAAGACATCCAGCTGGCCCGTCGTATCCGTGGGGAGCGTGCTTAGACGCCTACCTGAtttacctctcctcccctcaacagtctgccctccccttccctccccctctcctcttatgTTGGTAGTGATTTAGAGAAACAATGATTATGATAAGAATAATGTGTATAGTGGTGTTTTCTTAGTACTCTCGGCAGCAGACTATTATAGGGTACTCTTTTGTGCATGTACCTGCTTGTTGCTGGTCAGATCccccaccatcacaccatcaAATCAGATGTTCCATTGTCATGATGCCGTGTGGAGAGATCAGATAAAACAAGACAGGGAATCTGACATAGGTTGTGGTCGCAGGAGGATGGGGTTAGGTTTTTGTCTGCAGAGTGGAGTACCTCTTTCTCTGCAGGGTGCTAGAACAACTGCCCTAGTCCCCTTCCTCCTTCCCCACTCTTCCAGTGAAATAGAGACTGAGCTGGTATCTTTCATGGCAACACATGAACGAGagtccagcccccccccccccccccccccccccccccttgtgtgTGAGCGTGTAGATTCTGATCAGCACAGCAAATTGTATACAATTCAAAAACATCTCTGGAGCAATTGTTTATTACAATATTGATCATTATCATGGGTATTATTTTTTATGCTTACGCACATATTTCATAGTGGATAAAAGATTTGTGAATGAAATGGAGGTggattcaaataaaatgttgtACAGAAAACAAAATTGACGTAAGCTATCGTTTCTACTGGTGTTGAAGCTTGTGATTTGTTTTAGCTGTCAAAGGGGATTCTAGATTGTTCATTCTCATTTCATCGCCTCTTATATTGGCACTATTTTCCCTTTGTCTTTGAATTCTCAAATTTGGCTTCTGCGATAAATAATTGGAGACAGCATTTTAAGGCTTTTGCAAACAAATAGTGAATCCAGTGTTCTTTGTGATCACTCCTGTGGGGCCTTGTTGTGAGGTTTATGGAGCTGGTGGTCAATGCTCTCTTGCAAACCAAAAACAGTCTAATTGGTAAAGTGATCATGTATGTTAATGTTATGTGAGCTGTAATTGGAATGGTCACGGATATTTAGACCTCCCCCTTTGCTTCTCAGGTTGTGTCACCCTTTTAACTTAAAATCATTTTTGTTTCTTAATTGGAATTTGAAATGTTAAGATgtttaaataaaacaatgtttGTAATTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2174349 lncRNA downstream 18762 9986142 ~ 9986610 (-) True G1901088
TU2174348 lncRNA downstream 19478 9984308 ~ 9985894 (-) True G1901087
TU2174343 lncRNA downstream 31946 9972794 ~ 9973426 (-) True G1901082
TU2174327 lncRNA downstream 67920 9932534 ~ 9937452 (-) True G1901071
TU2174215 lncRNA downstream 82694 9921871 ~ 9922678 (-) True G1900968
TU2174361 lncRNA upstream 14499 10026853 ~ 10027069 (-) True G1901100
TU2174391 lncRNA upstream 59884 10072238 ~ 10072472 (-) True G1901126
TU2174393 lncRNA upstream 66537 10078891 ~ 10079273 (-) True G1901128
TU2174394 lncRNA upstream 66988 10079342 ~ 10079572 (-) True G1901129
TU2174396 lncRNA upstream 68319 10080673 ~ 10080949 (-) True G1901131
XM_021582157.2 mRNA downstream 21330 9979013 ~ 9984042 (-) True LOC110503696
XM_036961901.1 mRNA downstream 63604 9924311 ~ 9941768 (-) True LOC110503694
XM_021582151.2 mRNA downstream 107434 9892221 ~ 9897938 (-) True LOC110503691
LOC110503315 mRNA downstream 118311 9880097 ~ 9887061 (-) True LOC110503315
XM_021582148.2 mRNA downstream 142791 9848222 ~ 9862581 (-) True LOC110503688
XM_021582171.2 mRNA upstream 92212 10104566 ~ 10114246 (-) False LOC110503704
XM_036961836.1 mRNA upstream 92212 10104566 ~ 10114246 (-) False LOC110503704
XM_036961837.1 mRNA upstream 93651 10106005 ~ 10114248 (-) False LOC110503704
XM_036961067.1 mRNA upstream 117538 10129892 ~ 10139994 (-) False LOC110503316
XM_021582172.2 mRNA upstream 130674 10143028 ~ 10153093 (-) False LOC110503705
TU2174075 other downstream 431223 9570871 ~ 9574149 (-) True LOC110503680
TU2173065 other downstream 1957398 8046779 ~ 8047974 (-) True G1899875
TU2169441 other downstream 3545307 6458521 ~ 6460065 (-) True LOC110503590
TU2169340 other downstream 3773564 6182412 ~ 6231808 (-) True LOC118944082
TU2169333 other downstream 3807009 6182412 ~ 6198363 (-) False LOC118944082
TU2174494 other upstream 192866 10205220 ~ 10205948 (-) True G1901206
TU2174598 other upstream 386688 10399042 ~ 10399857 (-) True G1901302
TU2174716 other upstream 604570 10616924 ~ 10617481 (-) True G1901405
TU2174839 other upstream 841477 10853831 ~ 10856437 (-) True G1901516
TU2175108 other upstream 903200 10915554 ~ 10917934 (-) False LOC110503734

Expression Profile