RNA id: XM_036965239.1


Basic Information

Item Value
RNA id XM_036965239.1
length 9980
RNA type mRNA
GC content 0.54
exon number 11
gene id LOC110507235
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 42398689 ~ 42416136 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagtgggtgggaGCTAGACATTAGCGCTCAGACCATTCCTTTGATTCTCACAACACTCCCAGCTCAGACATACAGGAGTAGTCTTGTAACGAAATGGCTTGCAACCTCTAGGATTTCCCCTACAATTGACGACTAGGATCTAACTCTATACCTAAAAAAGGGATTCATATGAGATCATTCCAGGATGTGGATTCATTTAGCCTTCCATTGACACAGAACCTTTGCTTTCAGAACCCTTTAGAAGGTCCATGCGGGTTCCTTTCATCTTGAAgagagtttggagaaaaaagatctctctctctctcctgagtgtgaagctctctccctctccagaatGAGTGTGTGTGCCGACGTCCCCTCATACCTGCGGCGGTGGCTGCTGACTGCTGTGTTTATCTTGGCCACTCTGCTACCAGGAACCAGTGGCTGCCCCAAATCGTGCGCGTGCTACGTTCCCACCGAAGTGCACTGTACCTTCAGATATCTGACCGCAATACCAGGCCAGATCCAGACGGCTGTGGAAAGAATTAACCTAGGGTATAACAGTATAACCGTATTGAGGGAGAATGATCTGTCTGGGTTGAAACACCTGGAGCTGCTGATGCTCCACAGCAACACCATCCACAGCATCGCTGACAGGGCCTTTCAAGACCTCAAGTCCTTACAGGTCCTGAAGATGAGCTACAACAGAGTGAAGGAGATCAACAAGGACATCTTCCAAGGCCTGGAGGGACTGGTACGACTCCACATGGACCACAACCGCATCGAATTCATCAACCCGGAGGCGTTCTACGGTCTCACCACATTACAGCTGGTCCACCTGGAGGGCAACCTGCTCCAGCAGCTCCACCCGGATACCTTCATCACGCTGAGGCACAGCCAAGTGTTCAAGGTGTCCTCCGTCAGGAACATCCACCTGTCTGATAACCTCCTCGCCAGCCTCCCCAAAGACGTCTTCACTGGCTGCTCTCAGCTGGAGAATGTCTATCTCCACGGCAACCCCTGGTCCTGCGACTGTCGCATGGCTTGGTTCCCAGAGTGGGCGGAGAGAAATTCAGCTGTGCTGAAATGTAAGCGAGACAGGAAGTTTGCCAGAGGTCAGGCCTGCCCCATCTGTGAGACCCCCGCTCCCTCTAGAGGCAAGAGCCTAACCCAGCTTCCCCGTGATGCCTTCACCTGTACCAAGCCCTGGATCCACCCCCATCTGAAACAGAGGAACGTCAGCCTGGACGAGGGGGATTACACCCCTGTCTCGCCCCGGGACTTCATCGCTCCCATTGGATCTCTGCAGATGAATCTGACAGCTCAGTTCCACAATGACGCTAGCCTTACCTGCACAGTCCAGAGACCATCAGCCATGGAGAACCTGACTCTAACCCAGGttgaggagggggagaagaacgTGACCATGCTCTCCACCACCATCTCTACATGGCTGGTTTGTAATATTGACTATGAGCACATCCAACAGCTCTGGCGCATCCTGGCTACGTACAGTGACGTTCCCATGAGGCTAGAGAGAGGGTTGATGCTCTCCAGGACCCCAGACATGATCTACAAGTACACCCAGATCAGACCAAAGGAGGGACATGACGAAATCCACACAGACATTGAGGCTGAGATTAAGGCTTCACCCGCGTGGATGATGCAAGGAGAGGTCAACTTTCAGCTGGACCGCACTACGACCACATTCTCCACCTTGCACATTAAGTACAGGTCAGTGGTCAACCTGCGTGTGGAGAACAAGGTGTCACAGAGGAGGGACCGTTACAGCTGGACCATCATCAAACGAGACAACCAGACCCAGACTGAGCACTCTGTCCTCATAGGTGGGGTGGTGGAGCTCAACTGCAAGACCTTTGGGGAACCAAAACCCTCTGTAGAGTGGATCTTATCGGACGGCAGTAAGGTGCGGGCACCCTACTCCAGCGAAGACCGCAGGATAGTGATCACCGCTGATGGCAGGCTGACCCTGAGAGGAACAGACACCTCAGACACTGGGCTTTACCGCTGCATCGCCACTAACTACCTGGACGCAGACGTGCTCAGCTTCCGGGTCACCGTGCTGTCTCccgatgtggaggaggaggaggtcaacGGGGTCAAGCTCTCACGGCCACTGGGCCAGAGCCTGGTTCTAGACTGTGGGTCCACAGGCAACCCTGATGCCTCGGTCCAGTGGATTCTACCTGACCACACAGTGCTGGATAAATCCTATGGGAACAGGAAGCTCTATAGGAATGGGACTCTAGGAATAAAAGATCTGACCTCCAGAGACCGGGGATTTTACAGGTGTCTCAATGCTAACTACCTGGGGGTGGACCTGTTGACGTCCCAAGTGACAGTCACTGGGGAGGGGTCCAGGAAGGTGACAGTGGTGGATAGAGAGGGGTCAGGGGCGGAGGCTTTGTTTGAGGTTGACAgggccatagaggagagggaggattcCCACAGTGAGGTCCCTTCCTCCAGCCCCTCTGACAGAACTATCCAAGAGTCCAGGACCATCACATCAGACAGGCCCTACCCCAGACTTAGGTCTTCCTCTCAGGGCAGAGGATCAGCGGGCTcttgggggagaaggaggagccCAGCCAGCAGCAGGCGCATATGGAGCAACAGGAGGGTATTTGATCAAGCCTCCAGGAAAGTAGACCTCCAGAGATTTGCAGAGTTCATGAAGAAGGCCCAAGGTGGTTCAACAACAAAGACAAAGAGTGTGAAAGAAAAAGGAGATTCAGAGCCTGACATGTCTGGGGACCGGGATGCTGGATCTGGGGAGGGTCTGTCTCATGAAGACGGACTCATTGTTTTACCAAGCAGCGTCATGCCAACCACAGATTCTCCAGATGAAAGTATGATGGGTGTAACTGCAAGCATAGAGATTTTAAACAATCAGAATAATGTCATGGCAACCACCGACAACAGTGAAACCAGTGTCATGAGAACCATGGAGATCCCAAATGACAGTCGGACTAGTTTCACTGTAACAACAGAAAATACTGACAGAGTGACAACAGTGACGACAGATTCATACACCCGGTCAGACGCCACACCCATCGAGTCCACATTCACCCACAGCAGCCACAGCACAGGAAGTATCAATGAAACTCAAGGTGAGGCCGTCTTTCAATACAGCCCCAGAATTAGTGGGTCTAGTGGTGAGTCGTACTCTTTGGAGAGGAACACGACAGTACCTCTGAGACAACCCGTCACGCTCCTCCTCGCCGTGACCAACACCACAGACGAGACACAGATCCTGTTCTCCAGAGAAACACCTGCAGAACCAGATACCTCCACCGGGGCGGCGCTATCGCTCCTCACCGACCCCAATGTCACCCCCATGATGGACAGTCCCAGATCACCCAACAGAGAGCCTGAGATCCACACAGCCACTGACCCAGACAGCCAGACCACCTTCACCGCAGTcaccaccacagagagagagcaggatgagATCACCTTCCACACCACCCAGAAGATCAAGTCCCCCCGTCTGCCTGCAGGCTCCACCATCATCTCCCGCCAGCAGATCCATATCATCCCTCCTATGaagggcagaggaggaggaagaggagggggccGGAGGAGGAACTTCCCTGGCAGGAGGAGGTTCATCAAGCCCAACCGGATCACAGACATCCAGTCCATCCTGAACAAACTCAAACAGCCTAACATTGTGAAGAAGCAGGGCAGCAGCACAGTACCCTACACTATGGAGCTGACCACGGACTGCGACTGTGATGAAGATGAGAAGAAGATAGGTGGTCAGCGGGTCGTCACACCAACAACATCTCCTAAAACTCCCAACGTCCCTAGCTCCTCTCTAGGAAGAACAGAGAGACCGACCACCACATACTCAACAGAATCCCCCACCACAACCACCCAGCCCACCTCCACTCACTCTCagtcccccaccaccacccagccCACCTCTACTCACTCTCagtcccccaccaccacccagccCACCTCCACTCACTCTCAGTCCCACTCCACCACCCAGCCCACTTCCTCTCACTCTCAGTCCAGAGGTGAGGTATCCAGCAGCTACATGACCTCCACTAATGCCCCAGAGTTTGACCCAACACACAACCCTATGACGAGCACAACAGATGAACCAACAACCTCCACCATCACAACCACAATTGCCTCCAAGATCGTCCGTGGTAAGATCATCTGGGGCAAGCTGTTTGGgaacagggacaggcagagggaAATAGTCAACAGACTACGTAAACCAGCCAGGCCCTCAACCACCCCAGAGGGCTCAACAATAGTCCAACCAACCACCCCCACAACTACAACCACAAACGCACTTCCCACCCAGCGGTCTCTGGCTGAACCTGTGACCGAGTCACCGTCTAGAGCAGGTAAACACAGAGAGACCCCAGAAATCTCATCAGACGATGACTATGGAGATTCATTGCCTGACTCTGAGGCCTCGACCACACCTCAGCCTGGCACTAGCCGTGGAACTACAACCCCAGCCTGGCACTGCAGGTACTCCCCCACCACAGAGTCTTCCCCAGACACCCTGACCATCGCCTCCCCACCTGCCCCAAGAGAAGACACAGATGAGGCCTCGTCCTCTGTGTCTGAATCTGGAGGGTCAGCGGGGTACCTATCCCGTAGATTTGGGGGAAACCGGAGACCAAATGGCGGGTCAGGGGGGTACCTATTCCGTAGATTTGGGGGAAACCGGAGGCCAAATGGAGGGTTAGGGGGCAGGAGGCCTTTCAGGGGCAGgaggcctttaaaaaaaaacttaacaACTACGGAAGCCCTCAGCACCACCATAGAATCAACAGAGCCTTCAACCACCATGGAGACCACCATGGAGACCACCACATATCCCACAGAAACCACCATGGAAACCACCATGGAGACCACCATGGAGACCACCACATATCCCATAGAAATCACCATGGAGACCACCACATATCCCGTAGAAGCCACTATGGAAACCACCATGGAGACCACCACATATCCCACAGAAACCACCATGGAGACCACCACATATCCCACAGAAACCACCATGGAGACCACAATGGAGACCAACACATATCCCTTAGAAACCACCATGGAGACCACCATGGAGACCACCACATCTCCCACAGAAACTACCATGGAGACCACCATGGAGACCACCACATATCCCACAGAAACCACCATGGAGACCACCATGGAGACCACCATGGAGACCACCACATCTCCCACAGAAACCATAATGGAAACCACCACATATCCCATAGAAACCAGTATGGAAACCACCATGGAGACCACCACATATTCCACAGAAACCAGTATGGAGACCACCATGGAGACCACCACATATCCCACAGAAACTACCATGGAAACCACCGTGGAGACCATCACATATCCCAAACATACCGTCTCGGTCTCCAACCCCCTGTACAAGCCGTCCAGAGAATCAGATAGGTCTGCAGTGACTGTGTCCACTGACATGACCTCCGTGGGAGAAACCACCACAGACTCCGACTCATACGATAATGAGAACTGGACAGATGAGATGAAGTCCTCCACTAACCGTCCACGAGCCTACACTTTCACCACCAGGCCCAGAATGACCTCTACCACAACTTATCCAACCACCACCTCAAGGCCTTACACTACATCATCAACGCGCGTCCAGACTAACATTGACCCCATCAGAGTGAACACTAACATCAAGCTCCCGTCAGGGAGAGACAGCCGTTACCAAATCACACAGAGACCCATGATCAGGAGAACCAGGCCCAAGGTGTCCAGTAACAGGGCCAGCAGTGGCCCAGACAAGACCCTGACCTTTGACACACTGACTATTCTGGAAGCAGAGCAGGGGCACGCCAAAGCCCCCTATAGCAGCAAGGACATAGACGATGCCATCTCCAACGCCTATACCCACATCACCGGCTATGATACGACAACAGCTAACATTGTGGGCTTTGAGCGGTCCACCAAGGACATGCTCACCAAGCCCAGGATCGTGGGAGGCAACGCTGCCAGCTTCACTGTCCTGTCCAACTCAGACGCCTTCCTGCCCTGTGAGGCCGCGGGCAGCCCTGAACCCACTATCAGCTGGAAACGCTTCTCTTCAAGCACTGGAAGCACAATGACCATCAACGGCAAGATGAGCAAGTTTGAAGTGTTCCCGAACGGCACTCTATCCATCCAGAACGCAAACATCAAAGACCGTGGTCAATACCTCTGCCTGGCTGAGAACGATCAGGGGTCGGACAAGCTCCTGGTCACCCTGTCCGTAGTGGCCTACCCCTCACGCATCCTGGAGCCCAAGGTACGGGAGATCAAATCCCACTCTGGGAAGACAGTGGAGATGAAGTGCAAGGTGGAGGGCCGCCCCACCCCTCTGGTCTCCTGGATCCTGGCCAACCGCACCCAAGTCAGGGGCCACAACTCGGACCCCAGAGTGTCAGTGACCCCAGAGGGCACTCTGCTCATCAAGCAGGTGTCTGTGTTTGACCGGGGCCACTACAAGTGCATCGCCAGTAACCCAGCAGGAGCCGACACTGCCACTGTCAGACTGCAGGTGGTGGCAGCACCTCCTGGTATCCTGGAGGCCAAACGACAGCAGGTCCAGACCGGTGTGGGTCAGAGCCTGTGGTTACCCTGTACCGCTCAGGGCAGCCCCCAGCCCACCGTGCACTGGGTCCTCTATGATGGAACGGCAGTGCGGCCCCTGAAGCCCTCTGTGGACCCCAGGGTGTCTGTGTCCACTAACGGGACGCTCCACCTGACCAATACGGCCGCCACGGACAGTGGAAAGTACGAGTGCATCGTCACCAGCTCTACAGGGTCGGAGCGCAGGGTGGTGACGCTCACtgtggagaagaagaaggagatggCTCCTGAGATCGTGGAGGCGTCACACCGCAGGACAGAGCTGGCGTATGGGGACCAGCTGAGGCTGAACTGCTCAGCCACCGGGGACCCCAAACCCAGGATCATCTGGAGACTACCGTCCAAGGCTGTGGTGGACCAGTGGCACAGGATGGGAAACCGAATCCAGGTCCTGGACAACGGCACCTTGGTCATGGACTCTGTGAGTGACAAGGATGCCGGGGACTACCTGTGTGTGGCGCGCAGCAAGGTGGGAGACGACCTCCAGCTCATGAAGGTCACTGTGTCCATGAAGCCAGCCAAGATCGAGCCCAAGATGTACGGCAAGAAGCAGGTCCCCTACGGCAACGACCTGAAGGTGGACTGTAAGGCATCTGGAACCCCGGAGCCAGAGATCTCCTGGGGCCTGCCGGACGGCACCATGGTCAACAGCGCCCTGCAGTCAGACAGCAGCAGTGGAGGGGGACGCGTACGGCGATACATCCTGTTTGAAAATGGCACACTCTATCTTAATCAGGTGGGCATGGCGGAAGAGGGAGACTACACATGCTACGCCGAGAACCAGTTGGGCAAGGATGAGATGCACGTCCACATCACCGTGGTGACGGCAGCGCCACGGATACGTACGCCCAGCCGGACCTACGCCCAGGTGAAGCCTGGAGGCAAAATCCGCTTTGACTGCGAAGCTACGGGCGAGCCCAAGCCCAAAATCCTGTGGATGCTCCCTACTAACGACATGATTGCAGCCTCCAACGAACGCTATCTGATGCACATCAACGGCTCCCTAGACATCCAGGATGTTAAGCTGGTGGATGCTGGGGAGTACGTGTGCATGGCTCGCAACACCGCCGGGGATGACAGCAAAGTTTACAAGATAGATATCGATGGCAACCCTCCGGTGATCAACGGCAACTCCCAGAACAGGATCGTAGTGAAAGACACGGCCACCAAATACTCCAGGAAGTTCATAGACTGCAAGGCCACTGGAGACCCGCTTCCCAAGATCACCTGGATCATGCCGGATAACATCTTCCTGAACGCTCCGTACTTCGGCAGCAGGATCAACGTCCATCACAATGGAACTCTCGAGTTCCGGAACGTCCGTCCGACGGACATGGCGGAGTTCGTCTGCATGGCGAGGAATGACGGCGGAGAGGCAGTGATGGTGGTACATCTGGAGGTCACTGACATGCTCCGAAGGCCTATCTTCAAGAACCCCTTCAACGAGAGAGTAATGACCCGTATGGGGAAGACCACAGTCATGAACTGTTCTGCatatggtcacccaacaccagaGATCATCTGGCTGCTACCTAACGGAACCCGCTTCACCGGGGGCTCCAACCGGGGCTCACGCCAACACCTAGGCAACGACGGAACCTTCGTCATCTACAACCCCAGCAAGGAGGACGCTGGGAAGTACCGCTGTGCCGCAAAGAACTCAGTGGGCTACATTGAGAAGCTGATAGTTCTGGAGGTGGGCCAGAAGCCATTAATCCTCACCAGGCCCAGAGGGATCATACGCAGTGTGTCTGGGGACCCTCTGTTCCTTCACTGCCTGGCTGATGGCAGCCCCAGACCCCGGATATACTGGACCATCCCTGGAGGCCACACCTTGGCCAGACCGCAGGTCCATGGGCGCCACCAGCTGATGGAGAATGGGACCCTGGTTGTCAAGGACACCACCCTCCACGATCGGGGAAACTATGTGTGTCGGGCGTCGAACGACGCTGGCGAGGCTGTTCTCACAGTGCCAGTCATCATCATCGCCTACCCTCCCCGCATCTCCACGGGACCCCCTCCCACCGTGACAGCGATGGCGGCGGCGCCCATACAGCTCAACTGTGCTGCCATCGGGATCCCAAAGCCAGAGATTACCTGGGAGCTGCCTGACCGCTCTGTGCTCTCCACGGCGGGAAAAGGGCGGCCCACGGGCAGCGAGCTGCTCCACCCTCAGGGCACGCTGATCATCCAGAGACCCACCACAGCAGATTCTGGCACCTACAAGTGCCTTGCCAAAAACCACCTGGGCACGGACTCACGGGTCACGTATGTACGTGTGCTGTGAGCACCAGCGCTGACTAAAGGGGAATATAGAATCCCTGGACTATAAACTCTTAACAGACACGGTAACTTCACAGTGTTTCTTATGATGTAAAATGTCAGGAAAGACTAATTTCCACATGCGGACTTGTGAGGAGCGGGGTGTGTGGAATAGTTTGATCACGGTACAGCTCACATCAATCAACCAAGTAGCAGAACGGGATTAttaagagaaggaggagggaatggaggaGGGGACGGAGGAGGGGACGGAGGAGGGAGCGAGGAAAAATAGAAGCTGTACAGAGGAGGGTCTGTTCTTTGCCAGGAAAGTTGTGACTAGCGAGGTGTTATTCTTATTATAACAGAGTCAGAGGTCTGGAAACGCACGGTTGGTTCTCATTTGAGGTGTTTTTAACAAGGGGCTGGAAGGTGGGTCTTACAGTGAGGCTACTTGTTGAGTGTTTTGACCAGACACTTTACTATTACAGCctgtggggagagaggaagagagaaactcACTATATTCCCTCTGGACACTTCCTCgatgtttatttttttggagTGTTGGTAATGACTCATTTGCTGCAATGACAGAAACATTCTATTATCAGAATGTTTCTGACTATTTTGCTTGTCAAGACACATTTCATATTTCTTGTGAATAAATCTTTATTAACAGGCAGTATATTTTAATGAATTCTgccaaatatacatttttaatatACATTTTACACTGGATTATCATACAGTTTTTCAAAACAAATTTCTCACATTTCTAactgtttatattttttaattagCATTGTTAGTttgtcatgttgttgtcttaTCTTCCCCCTCTCGTGGTTTGACAGTGCTTGTATCAATATAAAATGCAGGAGTTTGATTGGTGTCAATAGCGACTTTTATGGAGGTGAAAGTATCACCTGTACAGTATTCAGTGGCGTCGTATGAACTGTCACTGAAAGTAAATGCATTATTGGTTTTATGTAATAACATTCCTTTTGTAACTATCATCTACTTTGTGAATCAATGGTACGCGGGAGATGAAATTAAACCAAAGATGGAATGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2383388 lncRNA upstream 15757 42382680 ~ 42382932 (+) True G2084294
TU2383379 lncRNA upstream 21907 42375833 ~ 42376782 (+) True G2084285
TU2383366 lncRNA upstream 35875 42362606 ~ 42362814 (+) True G2084274
TU2383357 lncRNA upstream 41957 42356511 ~ 42356732 (+) True G2084265
TU2383356 lncRNA upstream 42974 42355490 ~ 42355715 (+) True G2084264
TU2383430 lncRNA downstream 5302 42421438 ~ 42421675 (+) True G2084334
TU2383436 lncRNA downstream 9007 42425143 ~ 42425343 (+) True G2084340
TU2383451 lncRNA downstream 18184 42434320 ~ 42434558 (+) True G2084353
TU2383455 lncRNA downstream 35287 42451423 ~ 42453488 (+) True G2084357
TU2383462 lncRNA downstream 43054 42459190 ~ 42459407 (+) True G2084362
XM_021587167.2 mRNA upstream 156687 42231358 ~ 42242002 (+) True LOC110507284
LOC118944685 mRNA upstream 616853 41778921 ~ 41781836 (+) True LOC118944685
XM_036965019.1 mRNA upstream 826767 41521446 ~ 41571922 (+) True dhx36
XM_036965039.1 mRNA upstream 892078 41485189 ~ 41506611 (+) False LOC110507232
XM_021588498.2 mRNA upstream 1194994 41194800 ~ 41203695 (+) True LOC110508050
XR_005040057.1 mRNA downstream 68720 42484856 ~ 42492905 (+) False LOC110508060
XM_021588510.2 mRNA downstream 68723 42484859 ~ 42488600 (+) False LOC110508060
XM_036965041.1 mRNA downstream 75324 42491460 ~ 42492431 (+) True LOC110508061
XM_021587166.2 mRNA downstream 86406 42502542 ~ 42503473 (+) True LOC110507283
XM_021588508.2 mRNA downstream 94683 42510819 ~ 42515563 (+) True LOC110508059
TU2383238 other upstream 137052 42260523 ~ 42261637 (+) True G2084156
TU2382880 other upstream 286653 41971259 ~ 42112036 (+) False G2083851
TU2382881 other upstream 385697 41972828 ~ 42012992 (+) True G2083851
TU2382447 other upstream 891516 41506359 ~ 41507173 (+) True LOC110507232
TU2382143 other upstream 1185917 41212204 ~ 41212772 (+) True G2083239
TU2383825 other downstream 647152 43063288 ~ 43064257 (+) True G2084659
TU2384320 other downstream 1116134 43532270 ~ 43532578 (+) True G2085037
TU2384422 other downstream 1316259 43732395 ~ 43733894 (+) True G2085122
TU2384668 other downstream 1702087 44118223 ~ 44119239 (+) True G2085314
TU2385505 other downstream 1991917 44408053 ~ 44410050 (+) True G2085969

Expression Profile