RNA id: XM_036965041.1



Basic Information


Item Value
RNA id XM_036965041.1
length 972
RNA type mRNA
GC content 0.50
exon number 1
gene id LOC110508061
representative True

Chromosome Information


Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 42491460 ~ 42492431 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGGCTATATCAAGTCTCTACTTCCTGTTGTTCATCCCGGCCCTCATCATCAATGGGGTAGCAGTCTGGGTCTGCATGCAACTTCGTTCAAAGTCCACCTTCATGGTGTATCTGAAGAACCTTCTGGCCGCTGACCTTCTCATGACCCTGACCATCCCTGTCAAAGCAGCCAATATCCTGCCCAGCACTCCACTGACTCTGAAGGCCTTTGCCTGTCGCTACTCTGATGTTCTTTTTTACCTCTGTATGTACATGAGCATCATTCTGTTGGGCCTCATCAGTCTGGACCGCTTCTTCAAGATCGTCAGGCCCTGTGGCAGGTTGTTGGGTCAGAACATTGTCTTCGGCAAAGTGCTGGCTGCTTCCATCTGGGTGGTGCTGTTGTCCACTGCTGTCATTCCAACCATGATCCTGACCAATCAGGATCCCACAAACAAGACTAAACTATTCTGTATGGCAATGAAGAGCAATGCAGGACAATATTTCCACAGTGGCGTGGTCAAATTAAACAACGCAATCTTCTGGGTGGTGTGTGTTCTTATTTGCTTCTGCTACATGTGCATAGCAAGGAAGGTTTTTCAATCATACAGGAAATCAGGAAGCAGCAATGACGAAGGGAGGCATAAGACCAAAGTGCGTGTGTTTTTGGTTCTGGTGGTTTTCCTGACGTGTTTCGGACCCTACCACGCCATACGGCTCCCCTACACCTTGCTTCAGGTTACCTCAACAACCAGCTGCACTAAGGTCACCTTACAGATCTCTAAGGAGTTCACCTTGTGGATGTCAGCCACGAACGTCTGTCTGGACCCTCTCATCTACTTCTTCCTCTGTAAGCCCTTCAGGATCACCCTGTTCAAGACGCTCCGTCTCCCACCTGGGACCTGTAGCTGGCTCACTGGGAGAGGACCCAACACAATAGAGGATCAGACCCCAACACAGGAGGGAGACTCCTGTGCCTGTACAGAAAATTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2383495 lncRNA upstream 2432 42488803 ~ 42489028 (+) True G2084394
TU2383491 lncRNA upstream 3759 42486556 ~ 42487701 (+) True LOC110508060
TU2383462 lncRNA upstream 32053 42459190 ~ 42459407 (+) True G2084362
TU2383455 lncRNA upstream 37972 42451423 ~ 42453488 (+) True G2084357
TU2383451 lncRNA upstream 56902 42434320 ~ 42434558 (+) True G2084353
TU2383498 lncRNA downstream 3557 42495988 ~ 42497663 (+) True G2084397
TU2383499 lncRNA downstream 6880 42499311 ~ 42500446 (+) True G2084398
TU2383501 lncRNA downstream 9184 42501615 ~ 42501828 (+) True G2084400
TU2383502 lncRNA downstream 9758 42502189 ~ 42502444 (+) True G2084401
TU2383508 lncRNA downstream 27214 42519645 ~ 42519875 (+) True G2084407
XM_021588510.2 mRNA upstream 2860 42484859 ~ 42488600 (+) False LOC110508060
XM_036965239.1 mRNA upstream 75324 42398689 ~ 42416136 (+) True LOC110507235
XM_021587167.2 mRNA upstream 249458 42231358 ~ 42242002 (+) True LOC110507284
LOC118944685 mRNA upstream 709624 41778921 ~ 41781836 (+) True LOC118944685
XM_036965019.1 mRNA upstream 919538 41521446 ~ 41571922 (+) True dhx36
XM_021587166.2 mRNA downstream 10111 42502542 ~ 42503473 (+) True LOC110507283
XM_021588508.2 mRNA downstream 18388 42510819 ~ 42515563 (+) True LOC110508059
XM_036965661.1 mRNA downstream 82151 42574582 ~ 42629238 (+) False LOC110508057
XM_036965662.1 mRNA downstream 82151 42574582 ~ 42629238 (+) False LOC110508057
XM_036965660.1 mRNA downstream 82152 42574583 ~ 42629238 (+) True LOC110508057
TU2383238 other upstream 229823 42260523 ~ 42261637 (+) True G2084156
TU2382880 other upstream 379424 41971259 ~ 42112036 (+) False G2083851
TU2382881 other upstream 478468 41972828 ~ 42012992 (+) True G2083851
TU2382447 other upstream 984287 41506359 ~ 41507173 (+) True LOC110507232
TU2382143 other upstream 1278688 41212204 ~ 41212772 (+) True G2083239
TU2383825 other downstream 570857 43063288 ~ 43064257 (+) True G2084659
TU2384320 other downstream 1039839 43532270 ~ 43532578 (+) True G2085037
TU2384422 other downstream 1239964 43732395 ~ 43733894 (+) True G2085122
TU2384668 other downstream 1625792 44118223 ~ 44119239 (+) True G2085314
TU2385505 other downstream 1915622 44408053 ~ 44410050 (+) True G2085969

Expression Profile