RNA id: XM_036965642.1


Basic Information

Item Value
RNA id XM_036965642.1
length 3904
RNA type mRNA
GC content 0.58
exon number 23
gene id cux1b
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 42666657 ~ 42816758 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCCGCGCTCCCCCCTTCCTTTCCCCTGAACTCCaaccctcgctctctctatcagCTTCTCATTCCGTCTCAATATGTCTCAAGATGGCGGCCAATGCGGGATCAATGTTTCAATATTGGAAGCGTTTTGATTTACAACAACTGCAGagagaaCTAGACGCCACCGCCACACAGCTCGCCAACAGACAGGATGAGAGCGAACAGTCCAGGAAGAAACTCATCGACCAGAGCCGCGACTTCAAGAAGAACACACCGGAGGATGTAAGAAAACAGGTGGCTCCCCTGCTCAAGAGTTTCCAGGGAGAGATCGATGCCTTGAGCAAAAGAAGTAAAGAAGCAGAAGGTTCCTTCTTGAACGTCTACAAGAGATTGATAGATGTTCCAGaCCCCGTCCCTGTGCTGGAGTTGGGTCAGCAGTTACAGCTGAAGCTCCAGCGGATGCACGACATCGAGACAGAGAACCTCAAACTCAGAGAGACTCTAGAGGACTACAACAAAGAGTTTGCCGAGGTCAAGAACCAGGAGGTGACTATTAAAGCGCTGAAGGAGAAGATCCGGGACTATGAGCAGTCCCTGAAGAACCAGGCTGAGAACCTGGTCCAGGAGAAACAGGTCCAGCTCCACAATGACTatgcagagaaggagagaACGCTCCAGGAGAGCCAGAACTCCATGTCCTCTAAGCTGGTTGAGGCTGATCACAAGGCCCAGGCCTTACAGACagCTCTTGAAACAACTCAGGCAGAGCTCTTTGATCTGAAGACTAAGTATGATGAGGACTGCACCGCGAAgGCCGATGAGATTGAAATGGTGATGACAGATCTGGAGAGAGCCAATCAGagagccGAGGCAGCACAGAGGGAGGCGGAAGCTCTGAGGGAGCAACTGACCTCTTCTAACCAATCCCTGCAGCTGACCACCCACATTCAGCCCACCCCAGACACGGACCAGGCGGTGGAGGCCCTGTCCCGCTCCAGtctggaggcagagctgggggCCAAGGACAGGGAGATGGTTCAGCTGGTGGAAGATGTTCAGAGACTGCAGGCCAGCCTGTCTAAACTCAGAGAGAGTTCCAGCACACAGATCACACAGCTGcaactacagctcagcaccaAGACGGACACCCTCAAGCAACTGGAGGAAAAGCTGCAGGAACATGCTGACTATGAAGAGGTGAAGAAAGAGCTGAGcatcCTCAAGTCTATGGAGTTTGGCCCAACTGACAGCTCAGTGCAGGACATGTCTAAACCCCTAGAAGTGTTGTTGTTGGAGAAGAACCGTAGTCTGCAGTCTGAGAGTTCCTCTCTGCGCATCGCCAACACAGAGCTGAGCGGGTCAGCCGGGCGGAAAGGGAAAGAGGCGTCCGTGGAGGAGACCACCACGCCCAGtaccccctccctgcctcctcctcttctccctccctccccccagccCCGAACCCCAACTGACCCCCTTAACACCTCGATCACCAACGGGACACACCCCTTCACCCCCACGGGCATCGGCCAGGACTTCTACAGCCCCCCTTTCCCACTGGTGGGGGGCAAGATGTCCCTCAACTCCCTCCTGCAGCGCCAGCTCATGCAGACGTTCTACTCCAAAGCCTTGCAGGAGTCCACTCAGGGAGCAGCTCTACTGTTCgcccctgtccactacacctctacctccacctccggCTCTGGCTCTAGCCCTGTCCCGCTCTCGGCCAGCCCCATGCAGTCTCCTGCAGGCCCAGAGGTGAATGGTAGTGGCGGtgccctgtccccctctcccagCCAGTCTGAGGGGACTGGGGGCAGTGTGTCTGACTGGGAGGACATGGACACCACAGAGATTGCCCGACAGATCAAGGAGCAGCTGATTAAACACAACATTGGCCAGCGGGTGTTTGGCCACTATGTTCTGGGCCTGTCCCAAGGCTCGGTCAGTGAGATCCTGGCTCGGCCCAAACCCTGGAGCAAGCTGACCATCCGGGGCAAAGAGCCCTTCCACAAGATGAGGCAGTTCCTGTCTGACGAGCAGAACATCCTGGCACTACGCAGCATCCAGGGACGGCAGAGAGAGAGCCCAGGCCAGCCCCTTAGCCACGCATTACAGGACGTACCGATGCAGAGAGCCAGCTCTGACCAAGCCTCGCGGACAGGTAACATCACCACACGCATCCGTACCCCAGAGTGTGGTTCAGACGACGCCATCAAGTCTATCCTGGAGCAGGCCAAGAGAGAGCTGCATGTGCAGAAATCTGCAGACTTCTCCCATGGTCCTTCTCCTGGTGGggggctgagaggaggaggaggaggaggaggcggtgGTTCGGACGAGGCCATCCGCTCCATCCTAGAACAAGCTCGAAGAGAGATGGAGGCCCAACAGGCTGCTGTGGAACCCAGCCTCAaagcctcctcttcttcctccacttCATCCTCTCACTCCCAGAGGGACTTACTGGTCTCCCATCTGGCTGCCTCCTTCCCTGCCTACACCCCTCTGGCTCTCTCCCTGAAGAACACCCCCACCGCCCTCCCAGTCTCCCCCTCCTCGCCCTCAACAGTCCTGGACTTCAGCTCCAGTGtgaagagggaggacaggggagtgTCAGTGCCAGACAGCCTGGCTGATGGGGTGCCCAGGCTGGGTCGGAGCCCTGAGGGGTCTGCCCGGCCTGGAGGGGGGCACCGGAGGGATCAGTGGTGGAGCAACATGAACCCAGACCCCCGCAGAGATACACCCACactggggggagaggagaaccACACCCAGGAGGACTCTAAAGAGgctcTTTCCCAGGGAAGTATGTGTGACGGCGTGGGGTCTCGGCAGAACCCTTGGAGCAAGATGACCTCCAGAGGCCTGCGTATGCAGCTGTGGCTGAACGGTGACCTGAGCCAGAACACACACATCAAGCCTGCTCACAACCAAGCAGAGGGCCAGACCTCAGCCAGCTGCAGCCCTGCCCCAGCAGAGGGCACTCCCAGCCAGACCTCAGCCAGCTGCAGCCCTGCCCCAGCAGAGGGCACTCCCAGCCAGACCTCAGCCAGCTGCAGCCCTCCTCCAGGGTCTCCACTGAGCTCTGCTGAGGAGTCACTCAATGGTTTAGGGGGCGACCGGGACCCTCTGGCCCCCCAGGCCCCGTCTCTGGAGCCCCCATCTGGTGAGCCCTCAGGGGGAGAGTCCCAGCCCGGTACGCCCCTGCCACTCCCTGGCCCCATCACAGGCCTCAGCATCCAGGAGACGATAGCCATGTCTCCTGAGCTGGACACATACGTCCTCACCAAGAAGGTCAAGGAGGTGCTGACTGATAACAACCTTGggcAGCGTCTGTTTGGGGAGAGTATCCTGGGTCTGACCCAGGGCTCGGTGTCTGATCTGCTGGCTCGGCCTAAGCCCTGGCACAAGCTGAGTCTGAAGGGACGTGAGCCATTCGTCCGCATGCAGTTCTGGCTGCAGGACCCACACAAAGTGGAGAAACTAATGGACATGAAACGCCTGGAGAAGAAAgccTACCTGAAGAGGCGCCACAGTTCGCTGAGTGATGGCCATTCTGTGGACGGTGGCCTGGCAGGGCCAGACTTCCTCCAGAGCGCCAGCCCCCAGCACCAGCAGCCTCCTCAGCTGTACCAGAAGAAGATCCGAGTGGTTCTGGGTCCCGAGGAGAAGGAGGCTCTGAAGAGGGCTTACCAAGAGAAACCCTACCCCTCCCCCAAAACCATTGAGGAGCTGGCCTCCCAGCTTCACCTGAAGACCAGCACTGTTATCAACTGGTTCCACAACTACAGGTCTCGTATCCGCAGGGAGCTCTTCGTAGACCTAGTCTTTAACCCCctgctctccatccctccccaggTCTCGTATCCTCAGAAAGCTCTTCGTAGACCTAGTCTTTAACCCCCTGCTCTCCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2383642 lncRNA upstream 3712 42662689 ~ 42662945 (+) True G2084517
TU2383620 lncRNA upstream 22023 42644416 ~ 42644634 (+) True G2084497
TU2383616 lncRNA upstream 25782 42640645 ~ 42640875 (+) True G2084493
TU2383615 lncRNA upstream 28430 42638005 ~ 42638227 (+) True G2084492
TU2383609 lncRNA upstream 35876 42630568 ~ 42630781 (+) True G2084486
TU2383651 lncRNA downstream 4502 42799702 ~ 42801989 (+) True G2084525
TU2383652 lncRNA downstream 5489 42800689 ~ 42801521 (+) True G2084526
TU2383706 lncRNA downstream 25129 42820329 ~ 42820671 (+) True G2084575
TU2383707 lncRNA downstream 25494 42820694 ~ 42820956 (+) True G2084576
TU2383732 lncRNA downstream 70024 42865224 ~ 42866788 (+) True G2084598
XM_036965661.1 mRNA upstream 37419 42574582 ~ 42629238 (+) False LOC110508057
XM_036965662.1 mRNA upstream 37419 42574582 ~ 42629238 (+) False LOC110508057
XM_036965660.1 mRNA upstream 37419 42574583 ~ 42629238 (+) True LOC110508057
XM_021588508.2 mRNA upstream 151094 42510819 ~ 42515563 (+) True LOC110508059
XM_021587166.2 mRNA upstream 163184 42502542 ~ 42503473 (+) True LOC110507283
XM_036965650.1 mRNA downstream 42045 42837245 ~ 42871484 (+) False LOC110508074
XM_036965652.1 mRNA downstream 42365 42837565 ~ 42870887 (+) False LOC110508074
XM_036965651.1 mRNA downstream 42365 42837565 ~ 42870910 (+) False LOC110508074
XM_036965649.1 mRNA downstream 42373 42837573 ~ 42871486 (+) False LOC110508074
XM_036965646.1 mRNA downstream 42379 42837579 ~ 42871484 (+) False LOC110508074
TU2383238 other upstream 405020 42260523 ~ 42261637 (+) True G2084156
TU2382880 other upstream 554621 41971259 ~ 42112036 (+) False G2083851
TU2382881 other upstream 653665 41972828 ~ 42012992 (+) True G2083851
TU2382447 other upstream 1159484 41506359 ~ 41507173 (+) True LOC110507232
TU2382143 other upstream 1453885 41212204 ~ 41212772 (+) True G2083239
TU2383825 other downstream 268088 43063288 ~ 43064257 (+) True G2084659
TU2384320 other downstream 737070 43532270 ~ 43532578 (+) True G2085037
TU2384422 other downstream 937195 43732395 ~ 43733894 (+) True G2085122
TU2384668 other downstream 1323023 44118223 ~ 44119239 (+) True G2085314
TU2385505 other downstream 1612853 44408053 ~ 44410050 (+) True G2085969

Expression Profile