RNA id: XM_036965650.1


Basic Information

Item Value
RNA id XM_036965650.1
length 2810
RNA type mRNA
GC content 0.58
exon number 9
gene id LOC110508074
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 42837245 ~ 42871486 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTTAaatagatcagagagagagatcaacacacgcacacacagccatCCCTGGGCTGAGAGACGGTGGATCCTAAAGTGTAGTGTGCGTCGAGCGGATATGGAGAAAATGTAACGTTGCCGCGGTAGCCTCCTAATCTCCGATATGAAGAGAATTAATGCATAGTATTGGCCTTGATTGgacaacaaaataacaacaacCAACAGTGCAAGGATTGGCTCCCCGACATCAGCGGGGATCGTAGCGCCGTGCAGTGAGTCGGACATCGAGcctctcccaGGTGGGTTGGCATGGCCCAGTGATGAACAGTGCGGCAGTGCCCGGCAGCCCGGAGTTCTCCTCATGCCCGCTGCCCGACTGGCGAGAGTTCTGCGAGCTCCATGCCCGTGCCTCCGCCGCCGACTTTGCCCACAAGTTCCGCCGCTTCCTGACGGAGAACCCGTGCTACGACTCCCCGGGCGCCGACGGCAGCTTCTCGCAGCACTTCGCCAGACACTTCCTGGAGTGTTTTTCTGCTGCTGTCACCCAGGCCAGGGACCACCAGGCCTCGCTCTTGCCAGGGGACGACGGCTCCAACGCTCCCCCCAAATACAGCATTGTTCCCTTCCTGGGGATCCAGGGCTGCCCTTTGCCCTACGGACACAACGACCTCTATCAGCGGCGCAAGGACGCCGGTGCCTCCAGCGAGTCCCTGGACAGTATGGACAGTGGAGGTTTAGGACTAGAAGGGATAGGCAGTTCCTCCTCTATGGCCACCTCCCGCACCCCTCAGCCTGCCCACAAGCCCTCTGCTCTGGGCCAGTCACGCAGCTCAGAGGACGTGTCAGTGGGACACCCCAAGGCCCGCTTCAAGAAGGGATTCTCTCTGAGGAACATGAGTCTGTGTGTGGTGGACGGGGTGAAGGAGATCTGGCACCGCCACGCCTCCCCTGAACCAGACCCTGTAGTGGGGTCCGGAGGGGTCAGACGGGTCAACGGAGGAGGGGAGCCAGGTGGGGACAGATGGTCCCAGAGACTGCGTCTTCCCAGGGGGTCTCAGGGGCACAAGGCTGAGCTGCtggagatccagagagagggtgCTCTGCGTTACATGGTAGCTGATGATACTAACTGTATAGGGGTGCCTCAGTGGCAGAAGTGTAGGTTGCTGCTGAGGAAGACCAGGAGGGACGAAGGGGGTGACAAGTTCCTGTTGGAGTTCTATGTGCCACCCAAGTCATCAAAGCCCAAGGTGAGCATCCCTCTGTCTGCCATCGTGGAGGTGAGGACCACCATGCCCCTGGAGATGCCTGACAGAGACAACACCTTCGTCCTGAAGGTAAGGGTGGAAAATGGAGGTGAATATATCCTGGAGACCATCGACTCGCTGCAGAAAAACTCCTGGGTGTCTGACATCCAGGACTGCATGGACCCTGGggacagtggagatgaCATTGAGCTGGCGTCATGTCCCCACGGCCAGGCGTCTAAAGAGTTCTCCATGGTGGCCTCCTGCAGCTGTGAGCTTCTGTCAGAGgGTGTTCATCGCACCCCTGAGAGGTCCTGTGGCTCCTTAGCAGAACTGTATAGCGCCCCCTCTGTCCGCTGTAGAGAACTACCCTTCACCCAGCACCCTTCCCATGTCCCCCTGGAGCGCTTCCTCCAGTCCCCAGAGGCCCAGGGGAAAAGCCCCGCCACAGGGGTTCTAGGTGACGGGGCGACTGAGGCGGAGGCAGAACCCAGCCTGGCGGAGTACCCATGGTTCCACGGGACATTGTCACGCGTGCGTGCTGCCCAACTGGTGCTGGCGGGTGGAGCTAGGAGCCACGGGCTGTTTGTGATTCGCCAAAGCGAGACGCGCCCGGGAGAGTACGTCCTCACCTTTAACTTCCAGGGCAAAGCTAAGCACCTGCGTCTGTCGGTGAATGGTAACGGTCAGTGTCATGTTCATCATCTGTGGTTCCACACCGTGTCAGATATGCTCAGGCACTTCCATGCCCACCCCATTCCTCTGGAGTCAGGGGGCTCCGCTGACATCACACTGCGTTCCTACGTACAAGTACAGGGTACCCCCACAGACAGATATCCcgtctctctctactgctctcacACAGATGTGACCGTGCCTCAGCTCCCAACCCCACCCAGGGACCAAGGCTGCTGGACTGACCCAACCCTTCACCTCCCCGGGTTCTCGCTGCCGGCAGGGCCCCCCTCCGACACCCCGATATCATCCAGCTCCTCATCCTCGCCCATCGCCTTTCCTTCCCACTCCCGTGGTGAGCCAGGCAGCGTAGGAGGAGGAGGCGAGGGGCTGGTTAGCAGGAGCAACAGCTCAGAACGTCTGTTAGATCCCTCTAGTGGTGCCTCGGACGACTACCAAGAGACAGACGGAACACGCAGGGCCAGAGCTGTGGAGAACCAGTACTCCTTCTACTGAGACTGGGCGCAACCAAACCGGGAGCTGTCATTGGCTGAGACACAGGACGTACAGGGATTTGGACTAAATAGGTGAAATGTCATGGATGGCTGGGGAGTGTGGATGGACATGGATCACTCATTATCTTGTTTATTTGATTGTTTGTGTTCTAAGAGATGTCCTGTTTCtccaatgtgtgtctgtgtccagttcACCGCTGGCTCTGTGGCCACACTCATCAGCTGACATTAAGGATATGAAAAAACAGATGATTTAGTCTTGAgtgtgaggagaaagagagggagggatgaatgaagacagcgggagggatgggatggatgaggagagggatggatggatggaggaggagagagggggagagtgatggatggatggaggaggagagagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2383707 lncRNA upstream 16289 42820694 ~ 42820956 (+) True G2084576
TU2383706 lncRNA upstream 16574 42820329 ~ 42820671 (+) True G2084575
TU2383651 lncRNA upstream 35256 42799702 ~ 42801989 (+) True G2084525
TU2383652 lncRNA upstream 35724 42800689 ~ 42801521 (+) True G2084526
TU2383663 lncRNA upstream 137338 42697934 ~ 42699907 (+) True G2084536
TU2383762 lncRNA downstream 9293 42880777 ~ 42881957 (+) True G2084610
TU2383760 lncRNA downstream 15995 42887479 ~ 42888954 (+) True G2084608
TU2383771 lncRNA downstream 39085 42910569 ~ 42911037 (+) True G2084618
TU2383781 lncRNA downstream 58458 42929942 ~ 43010963 (+) True G2084625
TU2383801 lncRNA downstream 116854 42988338 ~ 42990174 (+) True G2084638
XM_036965643.1 mRNA upstream 20487 42666657 ~ 42816758 (+) True cux1b
XM_036965636.1 mRNA upstream 40909 42666657 ~ 42796336 (+) False cux1b
XM_036965638.1 mRNA upstream 40909 42666657 ~ 42796336 (+) False cux1b
XM_036965639.1 mRNA upstream 40909 42666657 ~ 42796336 (+) False cux1b
XM_036965640.1 mRNA upstream 40909 42666657 ~ 42796336 (+) False cux1b
XM_036965670.1 mRNA downstream 19475 42890959 ~ 43078903 (+) False LOC110508072
XM_036965669.1 mRNA downstream 19475 42890959 ~ 43081678 (+) True LOC110508072
XM_036965668.1 mRNA downstream 122210 42993694 ~ 42996463 (+) False LOC110508071
XM_036965042.1 mRNA downstream 219665 43091149 ~ 43092189 (+) True LOC118944686
XM_036965659.1 mRNA downstream 225159 43096643 ~ 43111668 (+) False LOC110508068
TU2383238 other upstream 575608 42260523 ~ 42261637 (+) True G2084156
TU2382880 other upstream 725209 41971259 ~ 42112036 (+) False G2083851
TU2382881 other upstream 824253 41972828 ~ 42012992 (+) True G2083851
TU2382447 other upstream 1330072 41506359 ~ 41507173 (+) True LOC110507232
TU2382143 other upstream 1624473 41212204 ~ 41212772 (+) True G2083239
TU2383825 other downstream 191804 43063288 ~ 43064257 (+) True G2084659
TU2384320 other downstream 660786 43532270 ~ 43532578 (+) True G2085037
TU2384422 other downstream 860911 43732395 ~ 43733894 (+) True G2085122
TU2384668 other downstream 1246739 44118223 ~ 44119239 (+) True G2085314
TU2385505 other downstream 1536569 44408053 ~ 44410050 (+) True G2085969

Expression Profile