RNA id: XM_036965669.1


Basic Information

Item Value
RNA id XM_036965669.1
length 2121
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC110508072
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 42890959 ~ 43081678 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGTCGTCTAGGCGACGTGTTAAACCGTGTCCATTCCTTGTTATCGCCTGTGGTCTTTTAGGCCAATTTGAATGATTGAGTGGAGGGGTAAAAAAAAGATGTTGCATCAGAATGTATTTTGATATGGGGATATAATCTGTTGCGATGAACACTGGGGATTCATGTGTGAAAAAACGGGTGGCCTAGCCTCACCTTTCAAGCGCGTCAACCCCGAGGGAGTCCCACCTTCCAAAAACACGGACGAGGAAATCACGCTACTAGCTTGCCATCCAGCAGCCGATTGAAGCGCGCACTCGACGTTTGGACACCCTTCTGCTCTTTTTTGCCACCGCTCTTTTGAAGATTTGAGAAAATATCAAGAATAAGCGGGgaaaccatcaccaccaccacattcATAAAGGGGCGTTACGGAGAGAGTCGGACAAAGTGTAACATAAGTGATGATGAAAGACCGCACGCAAGAACTTCGACAGGGGAAGGagactgaggaggaagaggaggtggctGTGGGCATGGACAAAGGCTTCATGGATGAATTCTTTGAGCAGgTGGAGGAGATCCGTGTCTTCATTGAGTCCCTGGCTgagaaggtggaggaggtgaAGAGGAAACACAGTGCCATCCTGGCTGCACCCAACCCCGACGAGAAGACGAAGGGGGACCTGGAAGTTCTGATGACAGACATTAAGAAGTTGGCCAATAAAGTTCGCTCCAAACTAAAGAGTATCCAACAGACCATTGAGCAGGAGGAGAGTCAGAACAAGTCTTCAGCTGACCTGAGGATACGCAAGACACAGCACTCCACTCTGTCCCGTAAGTTTGTGGAGGTGATGTCAGAGTACAACGCCACCCAGTCAGACTACAGGGAGCGCTGCAAGGGACGTATTCAGAGACAGCTGGAGATCActGGGAGGAATACAACAAACGAGGAGCTGGAGAGCATGTTAGAGAGCGACAACCCAGCGATCTTCACCTCAGGGatcgtcaTGGACTCCAACATCACCCAGCAGGCGATGAACGAGATCGAGACTCGTCACACTGAGATCATCAAGCTGGAGAACAGCATCCGTGAGCTACATGACATGTTCATGGACATGGCCATGCTGGTGGAGAGCCAGggGGAGATGATAGACCGTATAGAGTACAATGTGGAGCATTCAGTGGACTATGTGGAGAGGGCCGTGTCAGACACTAAGAAGGCTGTTAAATACCAGAGTAAAGCCCGGCGGAAGAAAATTCTGATCATTATTTGCTGTGTAATTCTGGGAATCGTCATTGCTTCTACAATTGGAGGATACTTAGGTATAGCCTGAGACACACACTGAAGGTCATGTcaggagccacacacacacacacacacacacacacacacacacacatacaggtccACCAGTGGGCCCATTTTCCCTGAATAcaacacacccccacacacacacacacacacatacacacacatacaggtccACCAGTGGGCCCATTTTCCCTGAATAcaacacacccccacacacacacacacacacatacacacacatacaggtccACCAGTGGGCCCATTTTCCCTGAATAcaacacacccccacacacacgcccacacacacacacacacatacaggtccACCAGTGGGTCCGTTTCCCctgaatacaacacacacacacccacacacacgcacacacacacacacacatacaggtccACCAGTGGGCCCATTTCCCCTGAATACAACATCCTGTGTTCCTCAGCACAAAGCTCATTGTGATCAATTAAACACACTCCGTGTACAGGACAAAGATTGTCATTTCTGCATGACTTCCTTctttgtaaatgtgtgtgtttctgtaaagTGTTTATCTGAGTGTTGTGAAAgattttgaaatgtttctaaaatgtatttttttaacggggcggtgaggggggggggggggggggtgtaagaaACTACTGTTATACATACTAACACATTCCAAACGTCCAAATGTTGTGTTGACTCAGTTTTGAAACGCTTATGTATCCTAACAACCCACCTCATTTCAGACTTTTCTTGACACGGTTATTTTGAATATAATCAATATATATAATCAATGAATGGTTATAACCCAGGATCTGacgtcttcccccccccc

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0016020 membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG:

id description
K04560 STX1A; syntaxin 1A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2383760 lncRNA upstream 2005 42887479 ~ 42888954 (+) True G2084608
TU2383762 lncRNA upstream 9002 42880777 ~ 42881957 (+) True G2084610
TU2383732 lncRNA upstream 24171 42865224 ~ 42866788 (+) True G2084598
TU2383707 lncRNA upstream 70003 42820694 ~ 42820956 (+) True G2084576
TU2383706 lncRNA upstream 70288 42820329 ~ 42820671 (+) True G2084575
TU2383753 lncRNA downstream 1333 43083011 ~ 43085654 (+) True G2084604
TU2383845 lncRNA downstream 62118 43143796 ~ 43144844 (+) True G2084675
TU2384149 lncRNA downstream 101456 43183134 ~ 43183334 (+) True G2084902
TU2384165 lncRNA downstream 117344 43199022 ~ 43199230 (+) True G2084916
TU2384169 lncRNA downstream 130077 43211755 ~ 43211958 (+) True G2084920
XM_036965649.1 mRNA upstream 19473 42837573 ~ 42871486 (+) False LOC110508074
XM_036965650.1 mRNA upstream 19475 42837245 ~ 42871484 (+) False LOC110508074
XM_036965646.1 mRNA upstream 19475 42837579 ~ 42871484 (+) False LOC110508074
XM_036965648.1 mRNA upstream 19475 42837580 ~ 42871484 (+) True LOC110508074
XM_036965651.1 mRNA upstream 20049 42837565 ~ 42870910 (+) False LOC110508074
XM_036965042.1 mRNA downstream 9471 43091149 ~ 43092189 (+) True LOC118944686
XM_036965659.1 mRNA downstream 14965 43096643 ~ 43111668 (+) False LOC110508068
XM_036965658.1 mRNA downstream 15403 43097081 ~ 43111668 (+) True LOC110508068
XM_036965654.1 mRNA downstream 30119 43111797 ~ 43140821 (+) False LOC110508067
XM_036965655.1 mRNA downstream 30119 43111797 ~ 43140821 (+) False LOC110508067
TU2383238 other upstream 629322 42260523 ~ 42261637 (+) True G2084156
TU2382880 other upstream 778923 41971259 ~ 42112036 (+) False G2083851
TU2382881 other upstream 877967 41972828 ~ 42012992 (+) True G2083851
TU2382447 other upstream 1383786 41506359 ~ 41507173 (+) True LOC110507232
TU2382143 other upstream 1678187 41212204 ~ 41212772 (+) True G2083239
TU2384320 other downstream 450592 43532270 ~ 43532578 (+) True G2085037
TU2384422 other downstream 650717 43732395 ~ 43733894 (+) True G2085122
TU2384668 other downstream 1036545 44118223 ~ 44119239 (+) True G2085314
TU2385505 other downstream 1326375 44408053 ~ 44410050 (+) True G2085969
TU2386442 other downstream 2404959 45486637 ~ 45487737 (+) True LOC110508103

Expression Profile