RNA id: XM_036965668.1


Basic Information

Item Value
RNA id XM_036965668.1
length 2770
RNA type mRNA
GC content 0.47
exon number 1
gene id LOC110508071
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 42993694 ~ 42996810 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACACATGATGATTTTCATCTAATGTCTTGTCATTCCCATGACACCTCTGGCCTAATGACTGTCATTCTGGAGAGTCAGCACTGGACACCTGACCCGATCTTTCTGTGCTGTGAAGAGGGGTCATCACCACCATCCTGTATCCAGCTCTGTGCACTCCTATCTGGGGGTATGATCAGTGCACAGACAGCCTCTTCTCTCCAGGGTTCTGTGGATCCGTGATTCACCCTCAACCTGAAAACACACCCGTCCGTTCATGTTCGATTTGGACTCTTGTCACCGTTTATCTTTTTAAAAGCGATAACTCATCAGTGTGTCAAAGTGTTACGGGAGTGGATGAACTCGTTATCTCTCTGCAGCCTCCGTTGAACTGTGATCAAAGTACGTCCGTGTAGGGTACTAGTTTCTCTCCGAACAGTCGCTCTTGTTCTCTGTAATCGCCTTATTTTGTGGGGGCGAAAACTACAGAAACGGTTTCAGGGATGAAGCTGGTGAAAACTCAAAGGACAGAGTTCCTGGAGAATATCAGTGTTCTGCAGTGGATATGGAGCTTCCTCCTGTTAGGTCCGGTTTGTATTGGATTGATGGTGTACCTTCTGTCGACTTCTCTGTGGCCGCTGCCTGTTCTCTACCTCATCTGGCAGTTGACGGACTGGCACACACCTGAAAGAGGAGGCAGGAGAAGTTCTTTTGTGAGAAACTGGAAAGTGTGGAATCGCGTTAGGGACTACTTCCCCATGAAGTTAGTGAAGACGGCGGAGTTGAACCCGAACGAGAACTACATCTTAGGGTGTCATCCTCATGGGGTGTTGAGCATCGGAGCCTTTGCCTCGTTTAGCACCGAGGCCTGTGGATTTATGGACCTCTTTCCTGGGGTGCGCTCCTGCCTCTGCATCCTGGGGGGCCTCTTCAAGATCCCCCTCTACAGGGAATATGTCATGGCCACAGGTTGTTGTCCCGTCAGCAAGCCCAGTCTAAAGCACCTTCTGTCTCATAGTGGACAAGGCAATGCGCTGGTGATAGTGATAGGGGGCGCTGCTGAGTCGCTGTTGAGCCTGCCTGGGGTCAACACTGTGGTTATGAAGCAGAGGAAAGGCTTCGTCCGGGTGGCCCTGGAGTTTGGGGCTAACCTGGTGCCCGTCTACTCGTATGGGGAGAACAATATTTTCCGCCAGGTGATCTTCTCAGAGGGCAGTGTGGGCTGGAGGTTCCAGCAACTCTTTAAGAAAATCATGAGCTTTTCCCCATGTCTGTTTGTAGGTGAACGCTGGTTCTGGATGCCTTACCGCTGCCCGGTCACCACTGTAGTGGGTAGTCCTATCCCAGTGCCAAAGAGGCCTTCTCCCACTCAGGAGGAGGTGGACCACTATCATGGCCTCTATATGGAATCCCTGGTCAAGCTCTTCAATGAACACAAGGCCAGCTGTGGACTCTCAGACAGCCACGAGCTGCAGATCGTATAGACCAGTCATTTGTCCTCGTGGGAGCAGTCTAATGTGAATGACACCGTAGCCTATTGATCTCCACACTGAGACTACTTGAATAAACACATTCCCGCTAGAGGATCTGATCCAGGGATGTCAACAATCATTGATCCTTGGATTTACCCAAGCTGCCTGGCTACTAGCGTTTTTACTGAAAACTAGAATCTCACGTCATTTGGTCAGATGCTGTTTACGTAGTCTGTCCACGACATACTACTTTAAGAATGACTACAACGGAATAGTGCATGTGCTTAATATGTAGCAATAATTTAACCATCATttaaccatcattaaacaggtTCAAATTCAGCTCATTCTCCATTTCATAAAAAAACAGTGATTGATTGTGTGACTTAGGGTTTACTTAGAAACACTGGGCCGACATGTTGAGTACGATCAATTTTCTTAATTAAGAGTGTGAACACAGTCTGCCTCCCAGACCCAAAGATCAGctaactgaaacacacacacacacacacacacacttcaatatTATAAAGAGGTGTTTGAGCTGCCAGTCCAAAAGGAAGGACACTCTCAACATGATGATTTTCATCTAATGTCATGTCATTCCCATGACACCTCTGGCCTAATGACTGTCATTCTGGAGAGTCAGCACTGGACACCTGACCCAATCTTTCTGTGCTGTGAAGAGGGGTCATCACCACCATCCTGTATCCAGCTCTGTGCACTCCTATCTGGGGGTATGATCAGTGCACAGACAGCCTCTTCTCTCCAGGGTTCTGTGGATCCGTGATTCACCCTCAACCTGAAACACACCCGTCCGCTCATGTTCGATTTGGACTCTTGTCACCGTTTATCTTTTAAAAGCGATAACTCATCAGTGTGTCAAAGTGTTACGGGAGTGGATGAAATCGTTATCTCTCTGCAGCCTCCGTTGAACTGTGATCAAAGTACGACAATGCAGGGTAAAATTGCACACGCAATTATTGAAATGTAAAACAAAATCCTTGTCACCTGATCCATCATTACAAGGTGTTTTAAATCATTGTTTGGTCTCACCATCGTTAATTTACTGTTAAACAGCTGTAGTTTTTGTCTTTGGCTGTTCTAGATTTCCTCTGAGGGTTTTGTTGCAAGTCTTGTTCTCCTCCAATAATTTCCAGTTATTTAAATGTCCTCCGTGTGTATGACTTAGATACCGTAGCCAACCAGTTTAAACCAGTTCCATTCATAGTAACAATTTGTGGCCTACAGATTACTCTAACCATTTACACAACACAGTAACACAATGCTGTAAAATTCATAAAACACTCCCAGCACCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2383801 lncRNA upstream 3520 42988338 ~ 42990174 (+) True G2084638
TU2383771 lncRNA upstream 82657 42910569 ~ 42911037 (+) True G2084618
TU2383760 lncRNA upstream 104740 42887479 ~ 42888954 (+) True G2084608
TU2383762 lncRNA upstream 111737 42880777 ~ 42881957 (+) True G2084610
TU2383732 lncRNA upstream 126906 42865224 ~ 42866788 (+) True G2084598
TU2383811 lncRNA downstream 19018 43015481 ~ 43018097 (+) True G2084647
TU2383826 lncRNA downstream 68433 43064896 ~ 43065541 (+) True G2084660
TU2383753 lncRNA downstream 86548 43083011 ~ 43085654 (+) True G2084604
TU2383845 lncRNA downstream 147333 43143796 ~ 43144844 (+) True G2084675
TU2384149 lncRNA downstream 186671 43183134 ~ 43183334 (+) True G2084902
XM_036965649.1 mRNA upstream 122208 42837573 ~ 42871486 (+) False LOC110508074
XM_036965650.1 mRNA upstream 122210 42837245 ~ 42871484 (+) False LOC110508074
XM_036965646.1 mRNA upstream 122210 42837579 ~ 42871484 (+) False LOC110508074
XM_036965648.1 mRNA upstream 122210 42837580 ~ 42871484 (+) True LOC110508074
XM_036965651.1 mRNA upstream 122784 42837565 ~ 42870910 (+) False LOC110508074
XM_036965042.1 mRNA downstream 94686 43091149 ~ 43092189 (+) True LOC118944686
XM_036965659.1 mRNA downstream 100180 43096643 ~ 43111668 (+) False LOC110508068
XM_036965658.1 mRNA downstream 100618 43097081 ~ 43111668 (+) True LOC110508068
XM_036965654.1 mRNA downstream 115334 43111797 ~ 43140821 (+) False LOC110508067
XM_036965655.1 mRNA downstream 115334 43111797 ~ 43140821 (+) False LOC110508067
TU2383238 other upstream 732057 42260523 ~ 42261637 (+) True G2084156
TU2382880 other upstream 881658 41971259 ~ 42112036 (+) False G2083851
TU2382881 other upstream 980702 41972828 ~ 42012992 (+) True G2083851
TU2382447 other upstream 1486521 41506359 ~ 41507173 (+) True LOC110507232
TU2382143 other upstream 1780922 41212204 ~ 41212772 (+) True G2083239
TU2383825 other downstream 66825 43063288 ~ 43064257 (+) True G2084659
TU2384320 other downstream 535807 43532270 ~ 43532578 (+) True G2085037
TU2384422 other downstream 735932 43732395 ~ 43733894 (+) True G2085122
TU2384668 other downstream 1121760 44118223 ~ 44119239 (+) True G2085314
TU2385505 other downstream 1411590 44408053 ~ 44410050 (+) True G2085969

Expression Profile