RNA id: XM_036965658.1


Basic Information

Item Value
RNA id XM_036965658.1
length 2246
RNA type mRNA
GC content 0.49
exon number 13
gene id LOC110508068
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 43096643 ~ 43111668 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTACTGTTATAATTTTGTCGGATAACAGGACGAAAGCTACTGTACTGAGGTGAGATGCTACCGTGTTGCACTATTGGGGTCAACTGAAGTGCAAACGTTCGTTCAAAAATATACCAAATTTCTCTGCTGACTTTACAAGTGTCCCTGTTCTACCAGTCCTTGACCCAGTACGGTAGTAGTATGTCTCGGGAACAGCTGGTGGTAGAGAGGGCAAGGAGGGCCTTCCAGACCGGTATGTCGAAACCCCTGAAGTTCAGAGTTCACCAGCTTAAGAACCTGCACCGTTTCATCACAGAGAGACGCAAGGACATTGCAGACGCTGTCAATAAGGACCTTAACAAGACTGAACACAGCACAGAGTTgtttgagaccctgggtctggaAGGGGAGATCGACGTGGCTGTGGAGAGGCTAGCAGAATGGGCTGCCCCTCGGCCTGTAGAGAAGAgcctcctcaccatcttagacgaGGTATACATCCAGCCAGAGCCCCTGGGAGTGGTCCTCATCATCGGGGCCTGGAACTATCCCTGGGCAGTGACCCTCCAGCCCCTGGTCGCGGCTATTGCTGCAGgtaATGCAGCTGTGGTTAAGCCGTCAGAGGTCAGCTCTCATTCAGCCAAGGTCATGGAGGAACTGCTCCCTCTCTACCTGGACAAGGAGCTGTACCCTGTAGTGTGTGGGGGTGTCTCAGAGACCCAGGAGTTGCTGCGTCAGCGTTTCGACCACATCTTCTACACAGGGAACAGCACTGTGGGTAAACTGGTGATGGAGGCCGCAGCCCGACACCTCACCCCTGTGACCCTGGAGCTGGGGGGGAAGAGCCCCTGTTACATCGATAAGGACGTCGACCTCAGAGTTGCGTGCCGGCGTATCACCTGGGGGAAGTTTGTGAACTGTGGTCAGACGTGCATTGCCCCAGACTACATCCTGTGTGAACCCAGCATCCAGGACAGAGTGGTGGAGGAGATCAGGAAATGCATCACGGAGTTTTATACGGACGACCCAAAGTCCTTCGAGGACTACGGACGCATCATTAACCAGCGCCACTTCCAGAGGGTGATGTCACTGCTCGAGGGGAGTACTGTGGCCATCGGAGGAGACAGCGACCAGTCACAATGCTACATAGCCCCCACGGTGCTGAAGGACGTGACAGGGGGCTCCAAGGTGATGCAAGAGGAGATCTTTGGTCCCCTGCTCCCCATTGTCACTGTTAGTGGAGTGGACGAGGCTATACAGTTCATCAATGAGAGAGAGAAGCCTCTGGCCCTCTACGTGTTCTCACCTGACAACAAGtTGATCAGGAGGGTGATAGCAGAGACTTCTAGTGGGGCCCTAGTGGCCAATGACTGTCTGGTCCATTTCACTGTCAGTGCTCTCCCCTTCGGAGGGGTGGGTAACAGTGGTATGGGACGCTACCACAGCCAGCACGGCTTTGACCAGCTCAGCCACCTGCGTGCCTGTCTCATTAAGAAGCTCAACCTGGAGGATGCCAACGCCATGCGTTACCCGCCCCACACGGCTAAGAAGCTGGGCTGGGCACGCTTCTTCCTCCTGAAGCGGGTCAACCTGCGCCGGCTCAGACGCATGGCACTACTGGCCCTGTTCTCTGCCATGACTGCCTTCATAGTACAGAGGTTCCTGCGGTGATGCTGATGTGGGGAAACTGTACGTGAGGCTCCGCCATCTTGGACCCTGATTTAGACTTGCTGGGGCAACAGTTATGTCTCAGTGTCAGTCATAAACATAGCAAAATTGCAATAGTTTATTTTAAATCACAATTATTTAACTCTTTTTTAGAACAAGGGTTATGAACCATTAATCATTTTAGAGGTGTTTATGATGCCAGTGAACCTGTATATTTgaggttattttttttatttttcgtaTCGTGTCTTACACATTTCATCTCTGGTGCGCTGTTGCAAATGGATTCTAACCTCAATGGAAGACTGAGTaccatgcatttgCATTATTCCTGGGAATTTCCTAAAGGAGTGCAACTGTTTTGTAATGTAGAGAATGTGCCTCTTGTTGTACTAGTTTTTATACTGATTATGTCAACAGTACTTTTATGTTTAGTATCAAAAGAAAAGTTGCCTGCCTTATATACTGTCTTAAACTGATCATCTCATTGTTCATGTTTTATTTAAGATATTAAAATGACATTTAGGCTTAGCTGtgaaataatatataaataagaCCGTGAAGAGTTATTCATTTCAAATAAAAAGTTATCTTGTT

Function

GO:

id name namespace
GO:0006081 cellular aldehyde metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004030 aldehyde dehydrogenase [NAD(P)+] activity molecular_function

KEGG:

id description
K00128 ALDH; aldehyde dehydrogenase (NAD+)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2383753 lncRNA upstream 11427 43083011 ~ 43085654 (+) True G2084604
TU2383826 lncRNA upstream 31540 43064896 ~ 43065541 (+) True G2084660
TU2383811 lncRNA upstream 78984 43015481 ~ 43018097 (+) True G2084647
TU2383743 lncRNA upstream 100271 42993697 ~ 42996810 (+) False LOC110508071
TU2383845 lncRNA downstream 32128 43143796 ~ 43144844 (+) True G2084675
TU2384149 lncRNA downstream 71466 43183134 ~ 43183334 (+) True G2084902
TU2384165 lncRNA downstream 87354 43199022 ~ 43199230 (+) True G2084916
TU2384169 lncRNA downstream 100087 43211755 ~ 43211958 (+) True G2084920
TU2384172 lncRNA downstream 107338 43219006 ~ 43219267 (+) True G2084923
XM_036965042.1 mRNA upstream 4892 43091149 ~ 43092189 (+) True LOC118944686
XM_036965669.1 mRNA upstream 15403 42890959 ~ 43081678 (+) True LOC110508072
XM_036965670.1 mRNA upstream 18178 42890959 ~ 43078903 (+) False LOC110508072
XM_036965668.1 mRNA upstream 100618 42993694 ~ 42996463 (+) False LOC110508071
XM_036965648.1 mRNA upstream 225597 42837580 ~ 42871484 (+) True LOC110508074
XM_036965654.1 mRNA downstream 129 43111797 ~ 43140821 (+) False LOC110508067
XM_036965655.1 mRNA downstream 129 43111797 ~ 43140821 (+) False LOC110508067
XM_036965656.1 mRNA downstream 129 43111797 ~ 43143108 (+) True LOC110508067
XM_036965043.1 mRNA downstream 79109 43190777 ~ 43218309 (+) True LOC118944687
XM_036965665.1 mRNA downstream 81847 43193515 ~ 43293841 (+) False LOC110508082
TU2383825 other upstream 32824 43063288 ~ 43064257 (+) True G2084659
TU2383238 other upstream 835444 42260523 ~ 42261637 (+) True G2084156
TU2382880 other upstream 985045 41971259 ~ 42112036 (+) False G2083851
TU2382881 other upstream 1084089 41972828 ~ 42012992 (+) True G2083851
TU2382447 other upstream 1589908 41506359 ~ 41507173 (+) True LOC110507232
TU2384320 other downstream 420602 43532270 ~ 43532578 (+) True G2085037
TU2384422 other downstream 620727 43732395 ~ 43733894 (+) True G2085122
TU2384668 other downstream 1006555 44118223 ~ 44119239 (+) True G2085314
TU2385505 other downstream 1296385 44408053 ~ 44410050 (+) True G2085969
TU2386442 other downstream 2374969 45486637 ~ 45487737 (+) True LOC110508103

Expression Profile