RNA id: XM_036965663.1


Basic Information

Item Value
RNA id XM_036965663.1
length 4335
RNA type mRNA
GC content 0.46
exon number 11
gene id si:ch211-167j9.5
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 43701561 ~ 43728339 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccccaaactgttgccacaaagttggaagcacagaatcctctagaatgtcattgtatgctgtagcgttaagattgccCTTCACTAgaagtaaggggcctagcccgaaccatgaaaaacagccccagaccattattccttctccaccaaacatGGAATACGCCAAACCCAAATTCGTCCAATGGCTGAGAGCTttgcaccactccagccgacgcttggcattgcgcatggtgatcttaggcttgtgtgcggctgctcggccatggaaatccatttcatgaagctcccgacgaacagttcttgtgctgacattgcttcaagaggcagtttggaactctgtattaggcttgtgtggcctaccacttcgcgggcgagccgttgttgctcctagacgtttctacttcacagtaacagcacttacagttgaccggggaagttGACTTGTTAGAATGGTGGCATCTTATGACTGTGCCACACTTGAACGTCACTGAGCTCTTgaagtaaggccattctactgccaatgtttgtctatggagattgcatggctgtgtgctcgatttttatacacccgtcagcaacaggtgtgaccgaaatagccaaatccactcatttgaaagggtgtccataCTCTTGTATATACCGTGTTACGTCACTTCATTCCAATAGAACAGTCCCATGTTCCAATGTTTACACTAGCATACAGTAGCACTTAGCATGCCTGCCCAATACATTGCTTTATACTaagtagtgggttagtgtggatATCCGAACCGTACATATCCAAGTCAAACAAAGCGGCTTTCTACATTTTGCTTGAgcagagtcccaaatggcatccccaTATACCCTTTGGAGTGCCCTAGTGGCTCTGAACCCTCTGCTGTATGGGCTAGATGTGCCCTGCACTGAGACAGGAAATTAAGACTTTTACGTCACAAACAGCACCCTATCCCCTTATGTCgtgccctacttttgactagggctctggtcaaaaggagtgctccatgtagggaatagggtggaatttTATACTTTGCAATTTACCACATCTTCAGCACTCTTTACCAGCAGCAAACACACAGATGCCGTTCTGGAACCCACGGCCCTACTGGTTCACTTCAGATCCAGTCAGCTACATTTTATTCTGATTCCAGGCTAGCCAGAAAACATATTTATCTTTTAAAACACTCCTATGAGCATTTCAATCCTGTGAAGCCCAGGGCTAATTTATTAACTGACCAGTGTACACCCCCTCCCTCTGTGGCAGGATGGTATGACCCGTTGGCAGATAGTGCAGTCTACTactgattttatttttattttttagttTTTTGATGGATCGGAAAGAGATGTAATTCATTGAAATTATCTTTTTATTTTGTAAAAAGTGTTTAAAGAATTAAAATGATATTGCACTGACATTGAAAATGTACATAGTGTTTTGTAAAATAAGCCATTAAAACAGATGTATTTGAATATgaactgtaaaaaaaatactgttgTTGTATATGGTGTGATGAAACTATTGATCTGTAACTAATATCCAAGCAACACATTCAATACAACAGATGCAATTAAGGCATTCAGTTGATGGGTTGGTTTtcttgtgtgtgcttgtgcttgtgtgtatgtgtgtgtatgtgtgtgtgtgtgcggaaaCCCCAACCCTCCACTTTTAGTCCGTGTCACTTTCTGCCGAACAGACTAGCTAGCAGCTGTGGTGGTCGGAACAGAACAGTTACTTCCCCGAAACAAAGACTCACAGCGTGTTGTTATGTACGCCTGACCCCAAAAAACGACAGACATCGTTTTATGTcctaaatggcaacctattccttacatagagccctatgggccctgggcaaaagtagtgcactgtatagggtgccatttgggacgaagacGGGACCGAACTTCACTGTGAAGCACCTATTTCCAACTGAAGAAGTTTTGTCTTATTTGTCTGTCTGCTTCGTACTCCTCCATATAGATCATATCATTCGTATTCATTATATCCTTCACTGCCCGTAATTGATCCGATAAAGGTCACACGATACGGATAAGTTCCTCAACATTTCGTGGACCTAGGTGCTCATTGTATAGATGCTGTAATAAGTGTCTCTGTCAGTCAGACAGCTCGGTCTCCgcgtcagtttttttttttttttttttgaaaaccaCGGGATGCTACTGTGCATTTCCCCTCCGTGCTGTGTGGCTCTTGAGCAAACAAAAACCCGTCCTTCTGACTCCACTAACACAGGATATGATGTATTCCATTTCCTCTCAACGGGTGTCTTCTCGTCAAAGGGGGTCTCAGAGAAAAGCAGATCATCACAGTTATCGACAGAGAATCCTTCTGTGAGTCTAGACGTTGTCCCAAGTCTATTGTTGGGCAGTGTGTTATGAAACAGATGTATCCTCCCCAAGGGGCCCTTTTGAGAGGACAAGTAGGGTTAGACGGGTAGATAGGTGGAGGTCTCTTTTTCTGACTCGTCACTGACATGAACAAGGATGATGACATGATGGCCTCCTTGAACAATTCAACCACCCAATTCTCCAACATGAAGTTGGACCTACCTCATTACCTCCTCATCGGGGTGTTTCTGCTCACCGTCCTGGTTTTCATAGTGCTGGGGACTCTGTGGCTCAAAAAGTATCGTTCCTTGGAGAGGACCATTCGGGACCTGCGAGGAGGAAGGCCTCTGGGAAATGTACTTTCCACTCCAGACTCCCCGCTCCTCTCTCCTGCTTCCCCCAGCCCGTACCCCGTCACCTTGACAGAGAAGCTGGGGAAAGAGGACCCTGAGGAGCAGACGTCACTACAGAGAAACAAGAACAGGTCTGTCACTAACAGACTGCTTTGGAGGCCACCGCAACAGGGTCCCCGCTTCACCAAGGCAGACCTCAGTCTGCTGCAGCTCATcaaggcagggaaggagggagtctTCTACAAGGCCAGGATGACACGGGGAACTTGCAAGGGACACGGCATGTTCACCTGCAAGATCACCAAAGAGGGTGTGACCCCTAAGCGTATGGAGATGGAGGTATCCATTATGAGGAAGCTGGTGCACCACAAGAACATTCTCCAGCTGCTGGACTGGAACACCACCGAGGAACCCTATGTGTTGATCATGGAGTTTGTGAGCTACGGAACCCTGCGGCGCTTCCTTCAGACCCACAAAGACgatctgacctctgaccctgagCTACAGAGCTTGCTCACCATCGCGTCCTATCACATCGCACTGGCCATGGAACATCTCCGATCCAAAATGGTGGTGCACTGTGACCTGGCCCTCAGGAACATCATGGTGAGCAGGTTTCCCTGGGAGGTAAAGGTGTCAGAGTTTGGTCTGGCCAGAGACCTGACCCGCATGAAGAGCCGCCACAGCAGTCGCAGGAAACTCCCAcggGAACGTGTGCCACTACGCTGGTACCCCCCCGAGTACTTCAGAATCAACTATTACAGCTTCAAGGGGGACGTGTGGGCATTTGGCATCGTGCTGTGGGAGATACAGACGTTTGGCACCTTACCATACCATGACTTGGAGACACCAGAGGCCGTCGTCTATCACATCTGTGCCGGTCTCAAGAACAAAGACCCCGAGGGCTGCAGGCCAGAGATactgcaGTTAATGAGAAACTGCTGGATGGAACCCTACACTTCCAGGCCCTCCTTCTCAGACATAGTGAGAATCCTGGAGGACATCATGGAGAATGATTCAGATTACGTGGATGTGGAGAACCCAAGACTTCTAGAAACGGGAGAGACGGATAGCCACGACTCCAAAAGTGTCAAACGGTACATCTCGACAACTCAGCTTTGAGATGATGCTGTATCTAAACGGAACATATTCGATACCTGGAATTGATAATGAAGTCAACAATGTGAAGCTACTATCTCGTGGTCATTTCAAATCATTTGAAATGAGATATTCTGTTAATTATACATTTTCTTAATGGCGCTACTGCCACTTATGTAAATAAACTGTAAGAAGTAATAATGACTTGTGTAATATTTCAGGAAATACAATTTTtattcattacaacaacaaaatggGGGTTGTTTAATAATAACAGTGATTTATTGGCTGGGTCATCTTGGACCAAGGACTATTAGCACTCAATGTCTGAATCcaaaatggaacactattccctatatagtgcacttcttttgattagagccctatggggtaagtagtgcattatatagggaatagggtgccattttgggaagTGCACAATGACAAAAGTGGAAGTTCTTGTTGAGCAGCTTTGTACTCTTAACTGCACAATGAATTTCCCTGCTGGGACAATAAAGTGTGAATTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2384378 lncRNA upstream 108090 43591180 ~ 43593471 (+) True G2085080
TU2384376 lncRNA upstream 112245 43587876 ~ 43589316 (+) False G2085078
TU2384375 lncRNA upstream 112245 43588805 ~ 43589316 (+) True G2085078
TU2384324 lncRNA upstream 161904 43539457 ~ 43539657 (+) True G2085041
TU2384321 lncRNA upstream 167465 43533823 ~ 43534096 (+) True G2085038
TU2384426 lncRNA downstream 6977 43735316 ~ 43735541 (+) True G2085124
TU2384427 lncRNA downstream 7518 43735857 ~ 43736158 (+) True G2085125
TU2384435 lncRNA downstream 10800 43739139 ~ 43743757 (+) False G2085126
TU2384430 lncRNA downstream 12120 43740459 ~ 43743757 (+) False G2085126
TU2384433 lncRNA downstream 12120 43740459 ~ 43743757 (+) False G2085126
XM_036965634.1 mRNA upstream 858 43573336 ~ 43700703 (+) False usp32
XM_036965635.1 mRNA upstream 858 43573336 ~ 43700703 (+) True usp32
XM_021588536.2 mRNA upstream 144502 43549252 ~ 43557059 (+) True LOC110508093
XM_036965665.1 mRNA upstream 407720 43193515 ~ 43293841 (+) False LOC110508082
XM_036965664.1 mRNA upstream 407720 43216710 ~ 43293841 (+) False LOC110508082
XM_036965223.1 mRNA downstream 50733 43779072 ~ 43799038 (+) False sult3st1
XM_021588530.2 mRNA downstream 65648 43793987 ~ 43799038 (+) True sult3st1
XM_036964962.1 mRNA downstream 72763 43801102 ~ 43844791 (+) True LOC110508083
XM_036965730.1 mRNA downstream 144787 43873126 ~ 44069585 (+) False LOC110508084
XM_036965732.1 mRNA downstream 144787 43873126 ~ 44069585 (+) False LOC110508084
TU2384320 other upstream 168983 43532270 ~ 43532578 (+) True G2085037
TU2383825 other upstream 637304 43063288 ~ 43064257 (+) True G2084659
TU2383238 other upstream 1439924 42260523 ~ 42261637 (+) True G2084156
TU2382880 other upstream 1589525 41971259 ~ 42112036 (+) False G2083851
TU2384422 other downstream 4056 43732395 ~ 43733894 (+) True G2085122
TU2384668 other downstream 389884 44118223 ~ 44119239 (+) True G2085314
TU2385505 other downstream 679714 44408053 ~ 44410050 (+) True G2085969
TU2386442 other downstream 1758298 45486637 ~ 45487737 (+) True LOC110508103
TU2386453 other downstream 1801117 45529456 ~ 45529939 (+) True mtus2b

Expression Profile