RNA id: XM_036965731.1


Basic Information

Item Value
RNA id XM_036965731.1
length 6494
RNA type mRNA
GC content 0.52
exon number 30
gene id LOC110508084
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 43873126 ~ 44069585 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGCACACACACGGCAcgcagcagacagacagtcagtcacacTATACCCACTCCGTCTTCACTTCGTCTTCACTCCGTACAGTTGAAAGAGGAGTGGATTCTGGAGCGTGAAAATGTCTGCAGTGATGTGGGGAGTTGTCTGAATTTTGATCCGTCTGTCTTAGGAGAGAATGGTGGAGGAAGCTGTCTCGTTATACACCTCTCAGCAAGatctCTGGTGTACAACGCCAtctaccatttttttttctctctctctctctctgtgattggATAGACAGGCTGATGGTGAAACTCAACATGCCAGTGATGTCAACGACGGACTGCAGACTGTAACCATGGGCAACGTGGAGAGCCAGAACGGCGACCATGCCTTCTACGGCACCCAACATGGCTACCTGTCCCGCAAACACATGTCTCGTTCCCTCCGCATCTCCAAGCATCAGTCCAGCTCCGGTTCCACCCGCTGCACCCACGACCGCAACGCCACTCAGGGCAAAGTAGAACACCGTAACTCTGAGACCTCCACGCGTTCCAGCAGCACCCCTAGTATCCCACAGTCCTTAGCGGATCACGCACTGGAGCCCTTCAACCAGACCAATGTCCTGTCAGACTTCTCCCCTATTTGGGTGGACCGTATGGCCATGAACCTCCGGCCCGTCTCCTTCCATACCCACCTGGACAACCCATCTGTAGGGCCCCAACTGGACAACCCATCTGTAGGGCCCCAGTTAGACCCAGCAACACCAGAGACTAGACCCCAGTGCCCCCAGGACAGAGGTCTAGGCCTGTACAATAACACTGGGGAGGGGACCTACCTCCAGAAGACCAGAGACGGACCCCGGGAACCCCGGGAACCCCGGGAGGGAGTCAGCTTTAAGAAGAAGAGGTCCAAATCAGCCGACATGTGGAGAGAACACAGTCTGGAGTTCAGTCTGTCAGACCTCAGCCAGGAACACCTCACCAGCACAGAGGAGATCATCGACACCGAGGAGGCAGACGACAGGGACTTCCCTGATTGTGAAGGCCTGCTGGGGCTCGTGTCCCCAGAGGGTCTGGAGGGTGTGGACGCTGCTGGCAGGGCCAACTCCCTGGATCAGCTGTATGGCGGTCAGAAGACCCCAACTCGCCGGCCCGTGGCACGCTATGCTAAGTGGCACCATGACGCTAACCGCGAAGCCCGGGAGGGAGAGGACGATAAGATGCTGTCTCCGTCGGAGGAGGATGGGAACTCGTACGGAGCGTACACTCTGCCCTGTCGACGCTCACACTGCCTGTCTGAGGGCCTGACCAATCACCAGGCTGCCTCCTGTAACACCATGCAGGGCCGCAGAGCACAGACCATACAGGATGTGACAGCCGGAGAGGGCAGTGAGTACGAGGACAGTGGCATAGACGGGGTGACGGCTTCGGGGGCAGAGCATCAGTCCCGGCGCTATAAGACCATGTCTATGTCCTTCTCTGTGTGCTCGGCGGCGGGGCGGAGCCTGTTTGCTGGCAGTGACAGCGGAAGCAGCAGCGGGGGAGGAGCCAGTGAGGGGGTCCAGGGGGTCTATGAGAACTTCAGACAGGAGTTGGAGATGAGCTCGTGTCAGACAGAGAGTCTGGAGGAGGCGGGGTCAGCACTGAGTGACGAACAGAGCGTCATGAGCTCAGCCTACCAATCAGATCCCCTGCTCAGCGTTGCCCAGGGAACCGTGAGGAAGGCGGGCCGTCTGGCTGTCAAGAACTTCCTGGTTCACAAGAAGAACAAGAAGGTGGAGTCGGCCACCAGGAGGAAGTGGAAGAGCTACTGGGTCTGCCTCAAAGGATGCACTCTGTTCTTCTACGAGACAGACGGACGGTCGGGGATCGACCACAACAGTGCTCCTAAACATGCGGTGTGGGTTGAGAACAGTATCGTCCAGGCCGTCCCTGAACACCCCAAGAAGGACTTTGTCTTCTGCCTCAGCAACTCTCTAGGAGATGCTTTTCTCTTCCAgtcCTGCAGCCAGACGGAGCTGGAGAACTGGATCACGGCCATCCACTCGGCGTGCGCGGCGGCCGTTGCCAGGCAGCATCACCGGGAGGACACGGTGCGTCTGTTGAGGGCGGAGATTAAGAAGCTGGAGCAGAAGATCGACATGGACGAGAAGATGAAGAAGATGGGAGACATGCAGCTCAGTGCCGTGACCGATACCAAGAAGAGGAAGACCATACTGGACcagATCTTTCTGTGGGAGCAGAACTTGGAACAGTTCCACATGGGTCTGTTCCGGTTCCGGTGTTACCTGGCCAGTCTGCAGGGAGGGGAGCTGCCCAACCCCAAACGCCTGCTAGCCGTAGCCTCCAGACCCACCAAACTGGCCATGGGACGCCTCGGAATCTTCTCTGTGTCGTCCTTTCATGCGCTGGTGGCAGCTCGTACAGAGAGCGGGGTGAGGAGACGTACCCAGGCCATGTCTCGTTCCTCCTCGTCCAAACGTAAGAGCAGGTTCTCCTCTCTGTGGGGGCTGGACACTACTTCCAAGAAGAAGACTCACCCCACCATCAACCAGGTGTTTGCTGATGGGGAGGAGCCAGTGAAAAAGCCTCTGGACGGGATCTATGATGTGGACACTGCCggggagagagggAAGAGTCATGAGGGGACAGTGAAGAGCCTTCCTCAGGTCAACTCAGACAGTCACATGACAGACAGTGATATCTGGGTGCCTGACCACCTGACACCGTCCTGGGTGTGTCTTCCTAACGACCAGCCTGTCCTCGCCATCATCCAGCCTGGAGAGTCTGCTCTGGACGTTCTAGAGACAATCTGCAAGGCCCACCGGCTGGATCCTGCCAAACATTACCTCCGCCTCAAGTTCCTCGTCGAAAACCAAGTTCAGTTCTACATCCCTAAACCGGAGGAGGACGTGTGTGActtgCTTTATAAAGAGATAGAGCTGGGCTCCAAAATAACCAAAGTCATCCAGTTCGACAGGGATGAGTCCTGTATGATTGGTTACGggttTTCCATCTCAGTGGTGGAGGAGGATTCAGTGCAGCAGCTCTACATTACCGATGTGAAGGCGGGAGGATTAGCCTTCGCTAAAGGTCTGAATGCGGGGGATGAGATCTTGCAGCTGAATGGGAAAGACTCGTGCAGATTGAAGTTCGGGGACATGAAGGGGGCGTTTTCCcaggcctctctgtccctgaccgtCAACACTCTGCCCTCCACGGACCGACGACAAATCTGTTACCTGCCCCCCCGACGCTCTGACGCACAGGAAGTCCTCCACACAGACATCTTCTCTATGAACCAGGAGGAGATTCTGGATGACGGGGTTGGTCTGACGCTGGAGAGTTCTGGAGACAGCCTGGACGACGACTCCGAGAGCTTCAGCGAGGCAGACCAATGCAGAAAGagTACGGAGCAGGTTGCAGCATTCTGCCGCAGTCTCCATGACATGAATCCGTCTGAGTGTGCCACAAGTTCCTCCTCCCCCAGTCTGGAGTCGCCCGTGCCTCCGCCCGCCACCGGCACCGCCACCGGCACCCGTCAGCTCTCCGACGCCGACAAGCTACGCAAAGTCATCTGTGAGCTGGTGGAGACCGAACGCACCTATGTTAAAGATCTTCATTGTCTCATCGGGAGGTATTTAACCCCACTACAGAAGGAGACCTGCCTCACTCAGGATGAGCTGGACATTCTGATTGGGAACCTGCCTGAGATGGTGGAGTTCCAGGTGGAATTCCTGAAGACTCTAGAAGACGGGACCAGATTGGTCCCAGACCTGGAGAAGCtggagagagtagaccagttcaAGAAAATCCTCTTCTCTCTAGGAGGTTCTTTCCTGTACTATGCAGATCGGTTTAAGATCTACAGTGCGTTCTGCGCCAGCCACACCAAAGTCCCCAAGGTGCTCGTGAAAGCTAAGACCGATGCAGACTTCAAGGCGTTTCTGGAAGAGAGGAACCCGAAACAGCAACACTCCTCAACCCTGGAGTCCTACCTGATCAAACCCATCCAGAGAGTTCTGAAGTACCCACTACTACTGAGAGAGCTGTACTCACTGACGGACCCTGACAGTGAAGAACACTATCACCTGAATGTCGCTATGAAGGCCATGAACAAGGTGGCCAGTCACATCAATGAGATGCAGAAGATCCACGAGGAGTTTGGGTTGGTGTTTGACCAGCTCATAGCGGAGCAGAGTGGAGACAAGAAAGAGgTTGCTGATCTGTCGATGGGTGACTTGCTGCTCCACACCAGCGTAGCCTGGATcaaccctccctcctccctgggcAAATGGAAGAAAGAACCCCAACTGGCTGCATTCATCTTCAAAACAGCCGTGGTGTTTGTGTGCAAGGATGGCTCCAAGCAGAAGAAGAAAATGgGTGGCTCCCATCGAGCGTCGTCTGTCTCGTCTGAAGACAAGGACCCATTCCGCTTCCGTCACATGATCTCCACAGACACGCTCCAAGTCCGAGCCCtcaataaccaagAAGGGGAGGCCTCTGCCGTATGTGAGATCGTCCACGTCAAGTCCGAGTCAGAAGGACGGCCGGAGAGGATATTCCACCTGTGCTGCAGTTCTGTGGACAGTAAGAAGGACTTCTTGAAGACAGTCCACTCCATCCTGAGAGATAAACAACGACGTCAGCTGATGAAGACAGAGTCTCTACCCCCCAACCAGCAGTATGTCCCCTTCGGAGGCAAACGCCTCTGTGCCCTGAAGGGAGCCAGACCTGCCATGAACAGAGCAGTGTCAGACCCGGCGAGGACCCTGGGTCGGAGGAAACTGGTGAGGAACCGTTTCACCATCGACACAGACATCGTCTTCGACGGCGAGCCGGACCAGGAGTCCCCTCTGTCTCCACTGTCCCCTGAAGAGCCTGAGGGACAGGGACAAAAGGAAGGACAGGGCCGGGGGGAGGTGCAGGCAGGGGATACGGACCGCTGGGTGGAGGAGCAGTTTGACCTGGAGCGCTAtgaggaggagcagcaggaggcGCAGGTGAAAGGAGGAGGAGACGTTAAAGAGACAGACATCCTTAGTGACGATGACGATTTCTGCCAGTCTGTTGGAGGACCCTCCACTGAACCTCTATCCACCACAGACCTAGAAGGGCCCGTAGGGGCCCTGTCCATGGGAGAAGAATGCAAAGAGGTGGGCCCTAAACACCTCCAGCCCCAGGGAGGCACGGGGACCACTACCCCAGGGATGAGGCTCTCCCACCCGGGGAAGCAGTGTGCTCTGGTTGGGtgTACAGATAGACTGGTGAACTTCGAACTGAAGCCCTCCAATGGGAGCAATACTGGAATACAAGGAGAGGAGAGCGGTCTTATCCAATCAACCAATGATATAGAGACATGGAGGGCTCTTCCAATCCTGGTGACGTAGAGGCCAGGCTGTAAGAGATTGACACTGACTGTCTAATGGTACAATCATGGACCCTGATCAATGCTGTCGATTGGCATGGTTTGCACATAGGGGTAGATTCCTGGGGTTACTATAGGTTCCTGCTTATTGTTGCCACGTGGGTATTTGTTGTGAACACACGACGCCttgtctgagagacagagagactttgTCTCATAGTAAAGAGTTGTATATTATCAACATAATACTCGGTGGTAGAGGACAGCATCGTCACGTCTTTAAAGTCGCCTGTTTTCACAGTATTTTATCTACTCAGTTTCTCAATTGACTTCCGTTGTTGTGTATATCATTTTGACTTCCTGTTTTGCAACTCGAAACCAGGCTCtcctattttttttattgtgtgtgtgtgttattaaaaCATGATTTTTTTCGTTCTGTGATGACATAGAATAACAGATGTTCGTTTTATTGACCTCATCTTCACTCTTCACTGAAGTTAAGGGATTTCAATtatctttttttaattttttttttattttataaaatcCTGTTTTACTTGAATTgtcattatttttttattattgtttttcttctttttcttcatttttaaatattttttttttttaactttccgGTCATTTTATTGGTCTTCATGACATCCGTTCTGATTACTACACCCTGTCACCTTTTATTATTACCGACACTGTTAGTGCACGTTCTTTGTTGTGGACAACTTGCACATACATTCATTACATTCAAGTATTTTAACTGTTaagaatttatttttattttttaaaatcttgtTGTTTCACACCAGCCAATAATGCATTTTCAAaaccatgttgttgttttttttaattggtGTTGATGATATTTTTTTGCcaccacaacaaaacaacaacaaaaaaaatgaccTTCTCAAATACATATAAAACTTGCTGGATGCAATCAAGATGGTGAAGATGTCTAAACTAGTGTAAAATGTTGAAAAGAAATCCTATAATATTACTAATAATTACTTGTGAAACAACCCAGTGTGCTACTAAGACTACATTTGTATTACTCTGTATGTAAATAGTACAATGTGTTGATATCATATCAAATAAATTGGTTTCCTACTTATCATTTACAGCACTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2384532 lncRNA upstream 13805 43902855 ~ 43903416 (+) True G2085205
TU2384497 lncRNA upstream 44789 43872163 ~ 43872432 (+) True G2085178
TU2384494 lncRNA upstream 58994 43857919 ~ 43858227 (+) True G2085175
TU2384470 lncRNA upstream 62271 43784348 ~ 43854950 (+) True G2085153
TU2384485 lncRNA upstream 74982 43841621 ~ 43842239 (+) True G2085167
TU2384679 lncRNA downstream 72952 44142537 ~ 44142949 (+) True G2085324
TU2384692 lncRNA downstream 101698 44171283 ~ 44172182 (+) True G2085337
TU2384661 lncRNA downstream 113058 44182643 ~ 44182909 (+) True G2085308
TU2384710 lncRNA downstream 129467 44199052 ~ 44205726 (+) False G2085352
TU2384713 lncRNA downstream 129956 44199541 ~ 44202380 (+) True G2085352
XM_036965044.1 mRNA upstream 18662 43896547 ~ 43898559 (+) True LOC118944688
XM_036964962.1 mRNA upstream 72430 43801102 ~ 43844791 (+) True LOC110508083
XM_036965223.1 mRNA upstream 118183 43779072 ~ 43799038 (+) False sult3st1
XM_021588530.2 mRNA upstream 118183 43793987 ~ 43799038 (+) True sult3st1
XM_036965663.1 mRNA upstream 188882 43701561 ~ 43728339 (+) True si:ch211-167j9.5
XM_021588541.2 mRNA downstream 19006 44088591 ~ 44090215 (+) True zgc:110333
XM_036965492.1 mRNA downstream 25859 44095444 ~ 44098036 (+) True cldn8
LOC110507242 mRNA downstream 30464 44100049 ~ 44101891 (+) True LOC110507242
XM_036965396.1 mRNA downstream 41965 44111550 ~ 44232823 (+) True LOC110508097
XM_036965371.1 mRNA downstream 798402 44867987 ~ 45360655 (+) False cadm2b
TU2384422 other upstream 183327 43732395 ~ 43733894 (+) True G2085122
TU2384320 other upstream 384643 43532270 ~ 43532578 (+) True G2085037
TU2383825 other upstream 852964 43063288 ~ 43064257 (+) True G2084659
TU2383238 other upstream 1655584 42260523 ~ 42261637 (+) True G2084156
TU2382881 other upstream 1904229 41972828 ~ 42012992 (+) True G2083851
TU2384668 other downstream 48638 44118223 ~ 44119239 (+) True G2085314
TU2385505 other downstream 338468 44408053 ~ 44410050 (+) True G2085969
TU2386442 other downstream 1417052 45486637 ~ 45487737 (+) True LOC110508103
TU2386453 other downstream 1459871 45529456 ~ 45529939 (+) True mtus2b
TU2387070 other downstream 1727514 45797099 ~ 45798593 (+) True G2087149

Expression Profile