RNA id: XM_036965396.1


Basic Information

Item Value
RNA id XM_036965396.1
length 4642
RNA type mRNA
GC content 0.46
exon number 16
gene id LOC110508097
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 44111550 ~ 44232823 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAAATATGTGCCCTACAACAAATAAGAAAAAGGCAGATAGATTGACCCAAATCCCCCCTGTCCTCAGATCCCTTGTCTCTCCAACAAAACTGTTAGAATAGTCAAACCCTTCTTCTTTTGAAAGTAAGTAAACTATGGAAAAGCAAAGTAACGTGGGTTTCTTTTTTTTATCGGGCtgtggcagagagaggagaagtatAGCCTGACTCCCTCCGTGGTTAATCTTCCCGGAGCGACTATTCTGAAGATTAGATCTGCGTTTCCCATCACGACTGGAGCAAAGATTTAATCATTCCTCGGTGTACTAAAGCAAAGACGAGTTGTCGAGGTCGGCTGTAGCCAGATTTGAAGTTAATCTTCTGAACGTATCCATGTTTGCGGATCAACACCGGCTTGGCGGTGCCCTCAATTGAGTGTGCGCACGGGGGAGACGCTCGCAGTATCACTGTTCCAAGTATACGCTGCCAACGATGAAAGAGGAGATACATTGTTTTCGGGACTATCTGAAATGGGGAGTCAAAAACTGCTAACACAAATGGGATTCTAGAATTGGAAAACGGGTCTCATTCTGAGTTTTATAAGGAACTATTCCAAAAGGAGAAAATTCGTGTTTTTATTTCTCTCAACATAATGTATAAGAGGAAAAATGTGGGTCGGATGTCGATTTCTGTTCGATACGGATACGAGAACTGGCAAGATATCAGCATGAATTAAaagcagaaagaaagaaaaaacagaCATCAATGTTCATTTTTATTTTGGAGCGAGTACCATGGCGAAAAGGAAGGGACTATTGTTTTCGCTGCTTTACTTGATGGCAGAGTTTTGGCTGAGTTGGCAGCAAGTCCTTAGAATCGGGGGTATCTTTGAGACCCTTGAGAATGAGCCCATTAGTGTGGAGGAGCTGGCCTTTAAATTCGCTGCAACAAACATCAACAGGAACCGGACCTTAATGCCCAACACCACACTGACCTACGACATCCAGAGAATAAACCTCTTCGACAGCTTCGAAGCCTCCAGAAGAGCCTGTGACCAGTTGGCTCTGGGTGTCGGGGCGGTGTTTGGTCCCTCTCACAGCTCCTCCGTCAGTGCTGTCCAGTCCATCTGCAATGCTCTGGAGGTACCTCATATCCAGACCCGGTGGAAACACCCCTCTGTGGACAACAAGGACAGCTTCTACATCAACCTGTACCCAGAGTATGCCTCCATCAGCAGAGCCATACTGGACATCGTACAGTACTACAAGTGGAAGACAGTCACTGTGGTTTACGAGGATGCAACTGGGTTAATTCGTCTTCAGGAGCTGATCAAAGCTCCGTCCAGGTACAGCATCAAGATTAAGATTCGCCAGCTGCCGACGGAGAGTAAAGACGCCCGGCCGTTACTAAAGGAGATGAAGAAGGGGAAAGAGTTCTATGTTATCTTCGACTGTTCCTACCAGACCTCCGCAGACGTACTCAAACAGATCATGTCCATGGGGATGATGACTGAGTATTACCACTTCTTCTTCACTACTCTGGACCTGTTTGCTCTGGACCTGGAGCCGTACAGGTACAGCGGTGTGAACATGACCGGGTTCCGCCTCCTCAACATAGACAACCCCCAGGTCGCCTCCGTGGTCGACAAGTGGTCCATGGAGCGCCAGCAAGCCCCGCCCAAACCAGAGACGGGCATGCTGGATGGCATGATGACGACTGAGGCAGCGTTGATGTATGATGCTGTGTACATGGTGGCAGCAGCCTCCCAGCTCTCCACTCAGATCACTGTCAGCTCACTGCAGTGCCACAGACACAAACCCTGGCGCTTCGGAGCACGATTCATGAACATGTTCAAAGAGGCGACGTGGAACGGTTTGACAGGACAGATCATTATAAACAAGACAGACGGTTTGAGGAAAGACTTTGACCTGGACGTCATCAGTCTGAAGGAAGACGGCTTGGAGAAGATTGGATTGTGGAACTCCAACAACGGCCTTAACCTTACCGAAAGTCTGAAGGATACGGGGACTAACATCACAGATTCCATGGCAAACAGGACTCTGGTCGTCACCACTATCCTGgaaaacccttacgtCATGTACAAGAAGTCTGACAAGCCTCTGTACGGTAACGACCGGTTCGAAGGTTACTGCCTGGACCTGCTGAAGGAGCTGTCCAACATCCTGGGATTTGCCTACGAGGTTAAACTGGTGTCTGATGGGAAGTATGGAGCACAAAACGATAAGGGAGAATGGAACGGCATGGTGCGGGAACTCATAGACCATGTAGCAGACCTGGCTGTGGCTCCTCTGACCATCACCTATGTGAGGGAGAAGGTGATAGACTTCTCTAAACCCTTTATGACCTTGGGAATCAGTATCCTGTACCACAAACCCAACGGCACCAACCCTGGAGTGTTCTCCTTCCTCAATCCCCTGTCTCCTGACATCTGGATGTACGTACTACTGGCCTGCCTCGGAGTCAGCTGTGTCCTGTTTGTCATCGCCAgGTTTACCCCCTATGAGTGGTACAACCCTCACCCCTGTAACCCTGACTCTGACGTGGTGGAGAACAACTTCACTCTCATCAACTCTGTCTGGTTTGGGGTGGGAGCTCTGATGCAGCAAGGATCTGAGCTGATGCCTAAAGCCCTGTCTACGAGGATAGTAGGAGGCATCTGGTGGTTCTTCACCCTCATCATCATCTCCTCTTACACGGCCAACCTGGCTGCCTTCCTCACCGTGGAGAGGATGGACTCTCCCATCGACTCGGCTGACGATCTGGCCAAGCAGACTAAGATAGAGTATGGAGCTGTGAGAGACGGATCAACCATGACCTTCTTCAAGAAATCCAAGATCTCCACCTATGAGAAGATGTGGGCGTTTATGAGCAGCAGGAAGAACACAGCTCTGGTGAAGAACAACAGAGAGGGGATCCAGAGAGTCATGACCACAGACTATGCTCTCCTCATGGAATCCACCAGCATAGAGTACATCAGTCAGAGGAACTGTAACCTCACGCAGATCGGAGGCCTCATAGACTCTAAGGGCTACGGCGTGGGCACTCCCATAGGCTCCCCCTACAGAGACAAAGTGACCATCGCCATCCTGCAGCTCCAGGAAGAAGGGAAGCTCCACATGATGAAGGAGAAGTGGTGGAGAGGGAACGGTTGTCCCGAGGAGGACAGTAAGGAGGCCAGCGCCTTGGGAGTGGAGAACATCGGTGGCATTTTCATAGTGCTAGCAGCCGGACTGGTTCTCTCTGTGTTTGTAGCTATCGGAGAGTTCATTTACAAATCCAGGAAAAACTTGGACATAGAGGAGGTGAGTGTAGGGCAGTGTGAGTGGCATCATAAGTACTAACAGAAAAAAAGGTGCTCCGCGACTGTTATTATGGACCTTCTACATAGAGTAGGTTGCTGTGGACCttatacacacagtcagtcagttgcTATGCACATTatacaatacacacagtcagtcagttgcTATGCACATTatacaatacacacagtcagtcagttgcTATGCACATTatacaatacacacagtcagtcagttgcTATGGACATTatacaatacacacagtcagttgcTATGGACATTatacaatacacacagtcagttgcTATGGACATTATACAGCACATAGAGTTATACCGTTGTTACTGACCTTGTAtaaacacagtcagtcagtcagtcagtcagtcagttgctGTGGACTTTATACATTACAGTACACCCATTCAGACTGTTATGGACTGTACACACAGTCAGTTGCTATGGACCGTACACACAGTCGGTTGCTATGGACCGTGCACACAGGTGGTTGCTATGGACCGTACACACAGTCTGTTGATATGGACCGTATACACAGTCAGTTCCTATGGACCTTAAACACACAAAGTTAGTTGCTTTTATGAATGTTGTTTTCTCGtcaaaggacagctttttttttttatcaggacaacttgtttcatcaggccagcaGTTTGGATTTGGGGAACTGCAGTGcaacaatcacacacaaatgaCTTTATTGTAGAGTAGGCCTAGTGTTTGAGGTACTTTTGATTTAGATAAAAATGAACATTTTTATTCCTTTATTGGCACAATATCTTATTTATAACGAGAGTCGGTTGGGTTTAAGGGAGGCACACCACTTGACTGTCTTGGCCTTGCTGTTTCTgtgtgaaaatgtattattttgtgtCATGACATGATACTGTAGGTAAGTGATGAAGATATAAGGTTTCACTGGAGGTTAATACGCACCATTACTGATCTATAACTTCTTAATTACATTTACTGATCTATAACTTATTGATTACATTTAACTAATGATTAGGTTTGAGGATATCATGTTTTGCTtgcaaatgtttgcaaatttacatCCAGGTATTTGTACAGCATAACGTAACAGTATTGCTTCTTCTGAACACCTTTGCTTGTATTcatatatatatgaaaatatctgaatgATTGTATGTACATGTGAGTGAGGTTTTTCCGAATCATTTATGGATGAGATGCCCCTTGAGACTTTATTCATTGAGTCGCTTTCATTCGTTGCTTTTTGTATCATTTGACGTTCATGAAAATGCATGTAAAAGTTGTCATGTTGGTTTTGTTTATGAACGACTAAAGTTATGTGGAGAACGTGA

Function

GO: NA

KEGG:

id description
K05201 GRIK1; glutamate receptor, ionotropic kainate 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2384619 lncRNA upstream 48405 44061807 ~ 44063145 (+) True G2085283
TU2384618 lncRNA upstream 53530 44056743 ~ 44058020 (+) True G2085282
TU2384616 lncRNA upstream 59654 44051095 ~ 44051896 (+) True G2085280
TU2384614 lncRNA upstream 69209 44041226 ~ 44042341 (+) True G2085278
TU2384610 lncRNA upstream 72124 44038808 ~ 44039426 (+) True G2085275
TU2385370 lncRNA downstream 6665 44239488 ~ 44239838 (+) True G2085874
TU2385372 lncRNA downstream 7060 44239883 ~ 44240150 (+) True G2085876
TU2385373 lncRNA downstream 7605 44240428 ~ 44240743 (+) True G2085877
TU2385375 lncRNA downstream 9199 44242022 ~ 44242223 (+) True G2085879
TU2385377 lncRNA downstream 10191 44243014 ~ 44243216 (+) True G2085881
LOC110507242 mRNA upstream 9659 44100049 ~ 44101891 (+) True LOC110507242
XM_036965492.1 mRNA upstream 13514 44095444 ~ 44098036 (+) True cldn8
XM_021588541.2 mRNA upstream 21335 44088591 ~ 44090215 (+) True zgc:110333
XM_036965737.1 mRNA upstream 41965 44005656 ~ 44069585 (+) False LOC110508084
XM_036965371.1 mRNA downstream 635164 44867987 ~ 45360655 (+) False cadm2b
XM_036965373.1 mRNA downstream 635164 44867987 ~ 45360655 (+) False cadm2b
XM_036965372.1 mRNA downstream 635166 44867989 ~ 45360655 (+) False cadm2b
XM_036965702.1 mRNA downstream 1211082 45443905 ~ 45479066 (+) False usp16
XM_036965698.1 mRNA downstream 1211083 45443906 ~ 45479066 (+) False usp16
TU2384422 other upstream 377656 43732395 ~ 43733894 (+) True G2085122
TU2384320 other upstream 578972 43532270 ~ 43532578 (+) True G2085037
TU2383825 other upstream 1047293 43063288 ~ 43064257 (+) True G2084659
TU2383238 other upstream 1849913 42260523 ~ 42261637 (+) True G2084156
TU2382881 other upstream 2098558 41972828 ~ 42012992 (+) True G2083851
TU2385505 other downstream 175230 44408053 ~ 44410050 (+) True G2085969
TU2386442 other downstream 1253814 45486637 ~ 45487737 (+) True LOC110508103
TU2386453 other downstream 1296633 45529456 ~ 45529939 (+) True mtus2b
TU2387070 other downstream 1564276 45797099 ~ 45798593 (+) True G2087149
TU2387599 other downstream 2090261 46323084 ~ 46323694 (+) True G2087569

Expression Profile