RNA id: TU2386107


Basic Information

Item Value
RNA id TU2386107
length 1036
lncRNA type sense_over
GC content 0.35
exon number 2
gene id cadm2b
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 44867987 ~ 45361689 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggattttgTGTCCCCTTACTCCCCTCACCATCCCTGTTATATATACCTTTTGCAGATATTTCCATCAGGAAGCGCAAAGAAATGTGCTTCATCTGACTCCGGAAAACATTGGCTATGCCGATAATTATGCTTTCAGAGAAGAATATGTGAAATGTATCAATGTGATGGGGCTTTATTGCAACTGTTAAGATGGTATTGGGTATGAGAGGCACACAATTAGGCTCTCATGTTGTGGAAAACGATGGAAGTACAATAAACTGAATAGTtctgacacacacaaaaaaaaaaacattaaaaaaaatatataaatttaaaaaaaagtttaataaaaaataaaaaaatgaagcaCAATCCGTATGATTGTTTATGTTTGAATGTGGATATTATATGATGATATGTTATCCTCTTTTAGCTTTATTTGTATATTAGTATAGGCCATAGTCTCATCTCATGTAGAAAGAAACCACAGAGAGAATCAAAAGTATAATAAAAGCACAAAGtctcagacaaacagagaaataCTTCTGCACCAAGCAATTCATTATCTCAGGATTCAATACGAGTCTAAATTCACTGATGTTTTCAGACCGATGATTGGAGATTCGGGATTCAATATGGCTGCGGGTTGTCAAGGGCCGTTCGACCCGAAAATCTTATTCACAGTAAACGCTGCAGATGTCGGGCTCAATGGGGAATCAAGGCAGAGCTACAGCGTTTtctgtcagaccaggagacattcCCGAAAAAAAATGGGTTTCTTCgcgcaacaaaaaaaaaaatataaaaggtAGTTAATGAAGAAACTTCTGTCATTAAAAAACAACGATCACCGTTATGGCCTTTGAGTTTGCTGCAAACAAGTTGTAATAACATGTTATCAAGGCTTTGGTGACCCAGACATCTTCCCCCTACTGTACATTGCCACTCTATCGAAGACATGTTGAAACACATTGCCAATATTCATAATTCATGTTCTTTTGTTAGTTCAATTTGATGCTATAAATAAAACTGACTAATTTTTTTGTATAAAGTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2386350 lncRNA upstream 80155 45278633 ~ 45279057 (+) True G2086573
TU2386341 lncRNA upstream 96980 45261756 ~ 45262232 (+) True G2086566
TU2386337 lncRNA upstream 101733 45256959 ~ 45257479 (+) True G2086563
TU2386323 lncRNA upstream 126636 45231987 ~ 45232576 (+) True G2086555
TU2386312 lncRNA upstream 154261 45204647 ~ 45204951 (+) True G2086545
TU2386378 lncRNA downstream 2780 45364469 ~ 45364749 (+) True G2086600
TU2386385 lncRNA downstream 17925 45379614 ~ 45380539 (+) False G2086604
TU2386386 lncRNA downstream 17925 45379614 ~ 45380539 (+) True G2086604
TU2386414 lncRNA downstream 60244 45421933 ~ 45422531 (+) True G2086630
TU2386418 lncRNA downstream 68360 45430049 ~ 45430323 (+) True G2086634
XM_036965396.1 mRNA upstream 1126389 44111550 ~ 44232823 (+) True LOC110508097
LOC110507242 mRNA upstream 1257321 44100049 ~ 44101891 (+) True LOC110507242
XM_036965492.1 mRNA upstream 1261176 44095444 ~ 44098036 (+) True cldn8
XM_021588541.2 mRNA upstream 1268997 44088591 ~ 44090215 (+) True zgc:110333
XM_036965739.1 mRNA upstream 1289627 44030564 ~ 44069585 (+) True LOC110508084
XM_036965702.1 mRNA downstream 82216 45443905 ~ 45479066 (+) False usp16
XM_036965698.1 mRNA downstream 82217 45443906 ~ 45479066 (+) False usp16
XM_036965699.1 mRNA downstream 82217 45443906 ~ 45479066 (+) False usp16
XM_036965700.1 mRNA downstream 82891 45444580 ~ 45479066 (+) False usp16
XM_036965701.1 mRNA downstream 82891 45444580 ~ 45479066 (+) True usp16
TU2385505 other upstream 949162 44408053 ~ 44410050 (+) True G2085969
TU2384668 other upstream 1239973 44118223 ~ 44119239 (+) True G2085314
TU2384422 other upstream 1625318 43732395 ~ 43733894 (+) True G2085122
TU2384320 other upstream 1826634 43532270 ~ 43532578 (+) True G2085037
TU2383825 other upstream 2294955 43063288 ~ 43064257 (+) True G2084659
TU2386442 other downstream 124948 45486637 ~ 45487737 (+) True LOC110508103
TU2386453 other downstream 167767 45529456 ~ 45529939 (+) True mtus2b
TU2387070 other downstream 435410 45797099 ~ 45798593 (+) True G2087149
TU2387599 other downstream 961395 46323084 ~ 46323694 (+) True G2087569
TU2387647 other downstream 1132233 46493922 ~ 46496887 (+) False G2087592

Expression Profile