RNA id: XM_036965702.1


Basic Information

Item Value
RNA id XM_036965702.1
length 4760
RNA type mRNA
GC content 0.46
exon number 20
gene id usp16
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 45443905 ~ 45479066 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATGCATAAGGTTAGGATAATTCACGTGGCAGGTCAGgcgaactgcattgttggttaagtgttTGTAAATATGCCTTTCagtgtaaggtctacctacacctgttgtatgtgacaaataccatttgatttgaattaggaAAAGGGTTCGGCTTAGTTAAAATGCTATTTTAACCTGCTACGAATAGTCATTTCCGGTCgtagctgtaccccctctagtcAGAACCTTGCTTTACAGTGCTACCAAATatttataactaaaccaagatagaccacagcctgtcgtttccaatgggaacaaattagTCACACTGAGcggaacaagcaaggaggtgggcagagctagagagatcctattggcgcgtttTACCGTtatctgcatatttccgttagggaacgcctactctatGAAGTACGCGTTAACTTGAATTCgactttgtttttattttaattgtatttttcttcgCAAAGGgtagtctacaaaacttagtccactctgttcataacatatttagttttgggaacagaaaactattgaaatcaaatgttttatCAATGAGAAAATTTGCTGAATGTTGGCCAAagtcttctcccactgccggccagtgggcttcctctcacaAGAATATTGGATGGAAACaccaagcggatgcttcacatttttTACATCCGGTTGTTAGCTGTGTGGACTCGGCACAGAGATATGTATAGTTTGGAGTCTTACTCAAAGAAGGGAAAACGAAACGGGCGACTGTGATTCACAAAAAGCGCTCCTCTGCCGGCTGTCTAAAGTCTTCCAGACAAGATGGTGAAGAGGAGGCAGAAAGGTCCTAGAGAGGACGAAGTGATAGACCTGACTgGTCCGTCGTGCAACCATATCCGTAAAGGTGTAGACTCCAGCTTCCTGAAGAAGACTGGGATAGACTCCGCCTGTAACAGCTGCCAAGACTGTAGGGGTGAAGAGCCGGCTGCTGCTGTACAGGCTCCATCAGAGGAGATGAGCGAAACACCAACGATATGGATGTGCTTAAAATGCGGACACCGAgggtgtgggcgtacctctgAGGATCAGCATGCTATCAAGCACTACGAGAAGCCTCGGTCAGACCCTCACTGTCTGGTGCTCAGCCTGGACAACTGGAGCGTTTGGTGTTACATCTGTGATGATGATGTCCAGTACTCTAAAACAGGCCATCTGGCTCAGTTGGTGAACAACATTAAGAAACAGGCCTTGTCTGAGCCCCGGAAACAAAGTCCACAGAGAAAGCATTCAATAGTGAAGCTGGAGGACAGCATGATAGAAGAGCCACAGGAAACCAAGccagaagagaaggaagagaacaCAGTGACACAACCGAAAGAAAACCAGAAGAAGAACGGCAAGAAAGAAAACGGTTTGAAAGAGAGCAGCAGTTTGACTAGAGGACAGAAGGCCGTGGGAGGAGCCAGCAGCGGTGCAGTGGGAGGAGTCAGCAGCTGTGCGTTGTCAGTTAGAGGACTCAGTAACCTTGGAAACACCTGTTTCTTCAACTCTGTTGTTCAGGCCCTCTCTCAGACACAGATGTTGAGACAGGTCATCAACAAGGTGACAGCTGAAGAGAAGACCAGTGTCACCATCACACCTGGAGTCTCCTCAGACCTGGAACCCATCCTGGTGCAGCTAGGTCCTCCGGGGTCTCTGACCGTGGCGATGTGTCAGATCCTGAATGAGATCCAGGAGACTAAGAAGGGGGTGGTCACCCCGAGAGAACTTTTCAGTCAGGTCTGCAAAAAAGCGGCACGGTTTAAAGGGTTCCAGCAGCAGGATAGCCAGGAGCTTCTTCGCTACTTGCTGGATGGGATGAGAGCCGAGGAGATGAAAAGACTGAACTCTGGAATATCGGAAGCACTGAAAAAACATGGAAGAGATGCTGAACAATCGAAGAAGTTAGTCAAGGAGTATGAGAAGAAGGGAGCTCCTAGTAACTTCGTAGACCAGGTGTTTGGTGGGGAGATGACCAGCACGGTCATGTGTCAGCAATGCAAGACGgtTTCTTTGGTCAAGGAGATGTTTCTGGATCTGTCCCTTCCTGTCTCAGACcagGCCTACAGGAAGAAGAGCCAGAAGAAAGGAGCGGGGAACCAGAAGGCTAGCACTGAGGTGAAATATAATAACGGAGACAGCCCCAGCCCTGTCTCCATGACCAACGGTGACTCCGACGACCTTCCTACTGGCAGCAAGTACCAGCagaagaaacagaagaaacagGCCAAGAAACAGGCCAAGAACCAGAGACGTCAGCAGAAGCTAGTCACCCTGGACAGCTTCACACCTCCAGAGATCACCGCAGAGAGCCCAGTACCagcagaggagggggaggagacaggaaatagtacccagggagaggaggaggagcctcTGGTTGAGAGCCAATCATCAGAGACCGAGAGGTCCGAAACCACTCCCTCAGAGCAGGACCAAGAGAAACCTCAGGGGGTAGGGCACacggagaaagaggaggaggattgtGAACCAGTGGCTGTGTCCAACAACCACTCCACTGTGATGTCAGAAGAGCAGCGTCACCAGTCCCCTGAGGGGGTTGTAAAAAGAGACGGACACGAGCCTGaacgtagaggagaggaggaggaggagaatgatgTTGATGCAGCCCAACCGTCTGGAGATGAGGAAGACACCAAACTGACAGACAAGCTCGGTGAACTATCTCTGAACGAAGCCTTCCTAGCCTCTGAGGACTCGGACCTGGAGCTGGGGTGCAGAGATGGAGACACGTCTGCTGAGATGGAAACGGAGACAAagctggaggggaaggagtacACAGTCTCTCACCAGGATCCTAAACTGGCCTTTCACACGCTGGCCACCAGGGCGGCGCCAGAGAACCAGGAGTGCTCTGTGGAGTCCTGTCTCTACCAGTTCACAGAGGTAGAGAACCTCACTCAGaacaactctcttctctgtgtcaccTGCACCAAGAGACAGACCAAAAACAAGGCTGCAGAAGGCTCCAAGAAGAATGTGTACACAGATGCTCTGAAGCAAATGCTGATCTCGTCTCCCCCTCCGGTGCTAACTCTTCACTTGAAGAGGTTCCAGCAGATTGGATACAGTGTGTGTAAGGTGAACAGCCACGTCAACTTCCCTCACATTCTAGACGTAGCACCATTCTGCTCTGTCATATGCAAGGGTGTGTCGGAGGGAGGCTCTCAGGTGCTCTACAGTCTGTATGGTATAGTAGAACACAGTGGGACTATGAGAAGTGGCCATTATACAGCCTACGTCAAAGCCAGACCTTTCTGCCCCTCCACGACACACAACGGAGTGGGCACACACGGCGAGCCAGAGCCGGTGAAAGGGGCGTGGTTCCACGTGAGTGACAGTAGTGTGCAGCCAGTCACGGAGAGCAAAGTGCAGAGCTGCCAAGCCTACCTCCTATTCTACGAGAGGATCTCCTAGACCTGCCTACGTCCCAACTTGTACCCTATTTACCTACATACTGTTGGCTGGGTTTACACGGGCAGCCCTGGTTCTGATCTTTAGAcaataattggtcttttgaccgaTCAGATCTTATTCCAATacttgggcaaaagatcagaattgcgCTGGCTGTTTTAGACGCagccgtagtgcactacttttggccagagccttATTATGCAGCCTTATGAGGCTTTTCCCGGCCAAatttagtgcactataaatgccctattccctacatagtgcactactcatgGCCTGAGACATTGTACTGGTATTGATATCAGCCAGATGAAGTGCAGAGTGAATACGAGTggggtgtttttattttattttttttataatcaatatAAAGGGTTGTGTCTtaaatgaaaccctattccctatgtggtgcactacttttgaccagaaccctatttgTCCtgttcaaaagcagtgcactaaaatagggaattaaaaataaaaaaaatgagggTGACATTTGAGACTTTGACAAAGATAATTAATTAAGATCATGACTGGGGATGTCCCAAAACGAACAATATTTAGCTTGGAAGTTTTTTTCTATGAATTAATTGTATCAGTAATGGACATAAAAAGAATCCccaagtatttttttttactgtgcatatgtgaCCTATACAGTGTTTTCCTAGAAAGAAAGAAGGGAGCACAGATCATtgtgtgcgtcccaaattgcaccgtGTATAAGGGCACTACATTTTGATCAGAGGTCTAAATTGGAAATCAGGTGCCATCCAGCCGTTCTATTCCTCTTAGACATGAAACCATAGAAGAGTTTGTTGATTGATCTGTCTGATTGCTTGGTGTGTTACACAGTAGAAGCAAAATAAACCTGCCAATaccttttttattattattattattattattgctgcaATATGTGACATTTTGGGcagacctgaccaaattcacatagaagtgcagttatagatctgtcattcttatTAAAGCAAGTTTAAGAATTGGCAGATATGTTCCATGTGTTCTAtttctgaaaatacaatatttttggtgatgtaaaatatatttcacagaggTTAAGATGGTACAATTATTCTCTACACTATTCTTCACGAACTGTaattaggaaaattataattttagcaaccaggaaatagcAAATATTTCTGCATAGTGCtcctttaaattgttaaaagctatcagtggggaaaaaaaacgataatttttgacatttttatttgagtactttttatattgtgttgtcaAGATGCAAATTAAAAAGCTTGAAATACGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2386428 lncRNA upstream 819 45442866 ~ 45443086 (+) True G2086644
TU2386427 lncRNA upstream 2693 45440762 ~ 45441212 (+) True G2086643
TU2386418 lncRNA upstream 13582 45430049 ~ 45430323 (+) True G2086634
TU2386414 lncRNA upstream 21374 45421933 ~ 45422531 (+) True G2086630
TU2386385 lncRNA upstream 63366 45379614 ~ 45380539 (+) False G2086604
TU2386452 lncRNA downstream 14202 45493268 ~ 45528316 (+) False mtus2b
TU2386468 lncRNA downstream 16529 45495595 ~ 45497342 (+) True G2086668
TU2386478 lncRNA downstream 35165 45514231 ~ 45514541 (+) True G2086678
TU2386488 lncRNA downstream 53695 45532761 ~ 45532987 (+) True G2086688
TU2386491 lncRNA downstream 58844 45537910 ~ 45538203 (+) True G2086691
XM_036965371.1 mRNA upstream 83250 44867987 ~ 45360655 (+) False cadm2b
XM_036965373.1 mRNA upstream 83250 44867987 ~ 45360655 (+) False cadm2b
XM_036965372.1 mRNA upstream 83250 44867989 ~ 45360655 (+) False cadm2b
XM_036965396.1 mRNA upstream 1211082 44111550 ~ 44232823 (+) True LOC110508097
LOC110507242 mRNA upstream 1342014 44100049 ~ 44101891 (+) True LOC110507242
XM_021588547.2 mRNA downstream 1262 45480328 ~ 45487709 (+) False LOC110508103
XM_021588546.2 mRNA downstream 1265 45480331 ~ 45487709 (+) False LOC110508103
XM_036965045.1 mRNA downstream 14157 45493223 ~ 45664305 (+) False mtus2b
XM_036965061.1 mRNA downstream 224099 45703165 ~ 45791795 (+) True foxo1a
XR_005039993.1 mRNA downstream 297953 45777019 ~ 45777979 (+) False LOC118944695
TU2385505 other upstream 1033855 44408053 ~ 44410050 (+) True G2085969
TU2384668 other upstream 1324666 44118223 ~ 44119239 (+) True G2085314
TU2384422 other upstream 1710011 43732395 ~ 43733894 (+) True G2085122
TU2384320 other upstream 1911327 43532270 ~ 43532578 (+) True G2085037
TU2383825 other upstream 2379648 43063288 ~ 43064257 (+) True G2084659
TU2386442 other downstream 7571 45486637 ~ 45487737 (+) True LOC110508103
TU2386453 other downstream 50390 45529456 ~ 45529939 (+) True mtus2b
TU2387070 other downstream 318033 45797099 ~ 45798593 (+) True G2087149
TU2387599 other downstream 844018 46323084 ~ 46323694 (+) True G2087569
TU2387647 other downstream 1014856 46493922 ~ 46496887 (+) False G2087592

Expression Profile