RNA id: XM_021588546.2


Basic Information

Item Value
RNA id XM_021588546.2
length 2557
RNA type mRNA
GC content 0.55
exon number 6
gene id LOC110508103
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 45480328 ~ 45487737 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTCAAATAGTGTAACGCCAAATACTTCCTGGTGCATACGTTTATTGTCACATGACATTTTGTTTCACCAGTGGAATGTAGACCAACCGAAAGCAGCATTTTTATCATAAACTGGTGTAACATTAAATGGAACTATCATCTCGGTGACATGACAGCAGCTTGTCAGGTTGTCACCACCATGTCTCTCAGGGGCGACCGTACCTCCGTGTTCACGTTCCAGTCTACGATTCACAGCTCCCACGTCCTGACGCGTCTCAACGACCAGAGACTGAGTGATGTGTTGTGTGATGTTACACTAGTGGCAGGTGGCAGGGCGTTCAGGGCCCACTGCTCTGTACTGGCCTCCTGTAGTGACTACTTCCACAGCAGGATCCTCAACCACACCAGCCCCAGCCTGGTGCTCACTCTGCCTGATCAGGTAACAGCAGAGGGGTTTGAACCATTGCTACAGTTCTGCTACACCTCCAAGCTGCTCTTCACCAAAGACAATATCATGGCCATCCACAGGTGTGCCGGGCTCCTGGGGTTTCACAACCTGGAGACTAGCTGCTTCGACTTCCTTCTGCCAAAGTTCCTGGAGGGTAGCAACATTACAGCCCAGGAggcaagaagaagaagaggaggctgCTGTCAGGGCAGGTCCCAGATCAGGTCCTCCAACCAGGGAAGATTGCCTAGTGGCAGGTCCCCCGGCCAGAGGAGGTCCCCCAGTGTTGATTCAACACACTGTACAGGCTGTCAGTCTCAAAGCAGGACCCCCAACCAGAGCATTTCACCCAGCCAGGGCTTGTTGCCTAGTGGCATGACCCCCAGCCAGGGCATGTTGCCTAGTGGCATGACCCCCAGCCAGGGCTTGTTGCCTAGTGGCAGTTTAGCCCACAATACAGACACAAACCGAGTCCGAGAGCAGCAGGTTCTACCTCATCCCCAGAACACGGGCCCAAGCCAGacaacaggaagtgatgtcaggAACATAGGAAGTGACGTCAGGGCACAGTGTTCAACTGCCAACCCAAGTGGAACAATGTCACACCAGAGTTTAACAGTGCCTTCGGACGGAAACGTACAAATAAACTTTCTGTCGTCATCCCGATGTCCAAAGAGCCTGGCCTTACTAGTCAACCCGGTCAGCAGTGGTCGGGAGCAGTTCTGTCTACAGACCTGTGGCCCCAACATGTCACCCTTATCCCTCGGGGGACTGCCGTCCTCCAGTGGTCTTGGTGTCTGTCCCATCCTGGCCATGCCGTGTCCTGGTGGTGTTGACCGTAAGCCAGACCCCGACGCCGTTTTCAGTGATAGAGACATCCTTGGGATGGAGGCAGCGGTGTGTCCCATGACGATGGGTGAGGGGAGTCTGAGAGATTGCCCACTCTCCTGTGAACTGCCGTCCCATGAGGATGCGAGCCCATCAGACCTTATTGAGGCAACGGTTGGAGAGATGGCTGATGACCAGCCTGTTGTTGGGAGTCTGATGGCTGAAGAAGCTGGGAGTAACCCAGGTTCCTGTAGCACGTGCCCACTGAGAGGCTCAGGGGTGGTAGAAGAGGCTGAGCTTCAGCTACCTGTATTGGATCTCCTGGCAATACACAAAAGCCCTAACTCAGAAAATAGTGAGGGGGAGAGCCATGGTGGATGCCTTATGCTCCCAAGGCCACAACGATTAGGTCAAGTAGATCAGCTACCTGTGTTAATGCAGAGAGAGGACCCTGGTCTGGATGGCAGCGTGGCTGTTGAGGGTCATCTCCCTGACTCCGCCCTCactgacccctccctctctgacCCCACCCTCTGTGGTCTTACCCCTGATGGTAGGGGGTATGGAGAGCGGAGCATCGTGGAGAGGGAGGTGGCTGAACATCTGGCCAAGGGTTTCTGGCCTGATTTATACCCCTCACAGACTGAATCTCTCCCTAGTCTCCCTAATCTGGACACCATGGAGCACGGAGGTCTGGGGAGAGTTCCTAATCTGGACACCATGGAGCACGGAGGTCTGGGAAAGGCTACAGACTTCCCCTGGCAGCTAGACCTGAACTCAAATCCAGCAGACTGTCCCTTCCTTAGAGACCTGGGGACAGGAGAGGCaggggggatggaggggatggaagaGGAGAGGACTCAGACGGAGACCTGGACACAGacggagacacggagagagaggccAACAACAGGAGAGCACAAGAGGTTCGTCTGCCCTTCCCGGTGGTTCAGATCTCGTCAGTGAGTCGTAGTGCCTTCCAACAGCTCCTACGATGCCAGCAGCTGACCCACGAACAGCTGGAATTCGTCCACGACGTTCGACGACGCAGCAAGAACCGCGTGGCCGCCCAGCGCTGTCGCAAGAGGAAGCTAGAAGGCATCAGTAAACTACAGACTGAGATCGGCACACTGagaggagagaagaagaggttgCTGGAGGAGCAGGCCCATCTGCAGAGGAACATGGAGGAGATGTTACAGAGTCTGACAGGGCTGTGTCACAGCGTCTGCAACGAGGCAGGGGTCTGTCATGAGCAGGACCAGCTACAGCTCCTAGCCAAGCTCCAGTCTCCTGACGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2386457 lncRNA upstream 4488 45473868 ~ 45475843 (+) True G2086658
TU2386428 lncRNA upstream 37245 45442866 ~ 45443086 (+) True G2086644
TU2386427 lncRNA upstream 39119 45440762 ~ 45441212 (+) True G2086643
TU2386418 lncRNA upstream 50008 45430049 ~ 45430323 (+) True G2086634
TU2386414 lncRNA upstream 57800 45421933 ~ 45422531 (+) True G2086630
TU2386452 lncRNA downstream 5559 45493268 ~ 45528316 (+) False mtus2b
TU2386468 lncRNA downstream 7886 45495595 ~ 45497342 (+) True G2086668
TU2386478 lncRNA downstream 26522 45514231 ~ 45514541 (+) True G2086678
TU2386488 lncRNA downstream 45052 45532761 ~ 45532987 (+) True G2086688
TU2386491 lncRNA downstream 50201 45537910 ~ 45538203 (+) True G2086691
XM_036965702.1 mRNA upstream 1265 45443905 ~ 45479066 (+) False usp16
XM_036965045.1 mRNA downstream 5514 45493223 ~ 45664305 (+) False mtus2b
XM_036965061.1 mRNA downstream 215456 45703165 ~ 45791795 (+) True foxo1a
XR_005039993.1 mRNA downstream 289310 45777019 ~ 45777979 (+) False LOC118944695
XM_036964714.1 mRNA downstream 715888 46203597 ~ 46349567 (+) False LOC110508109
XR_005039992.1 mRNA downstream 864286 46351995 ~ 46354652 (+) True LOC118944693
TU2385505 other upstream 1070281 44408053 ~ 44410050 (+) True G2085969
TU2384668 other upstream 1361092 44118223 ~ 44119239 (+) True G2085314
TU2384422 other upstream 1746437 43732395 ~ 43733894 (+) True G2085122
TU2384320 other upstream 1947753 43532270 ~ 43532578 (+) True G2085037
TU2383825 other upstream 2416074 43063288 ~ 43064257 (+) True G2084659
TU2386453 other downstream 41747 45529456 ~ 45529939 (+) True mtus2b
TU2387070 other downstream 309390 45797099 ~ 45798593 (+) True G2087149
TU2387599 other downstream 835375 46323084 ~ 46323694 (+) True G2087569
TU2387647 other downstream 1006213 46493922 ~ 46496887 (+) False G2087592
TU2387649 other downstream 1006213 46493922 ~ 46496887 (+) False G2087592

Expression Profile