RNA id: XM_036965045.1


Basic Information

Item Value
RNA id XM_036965045.1
length 7204
RNA type mRNA
GC content 0.56
exon number 16
gene id mtus2b
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 45493223 ~ 45664305 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCGCAATTCTCCATCCCCGCGCCGTCTCCTCTGTTTTCTTGTGATGCTGCAGAATGTTCCGTACCTCTCAGGTGTAAGGTTGGATGTACAGTTTTGAGGAAGACTTGAGGCTATTTCACACGGACTCTCCTGGATTTAAAAGGTTAAGGATCTCCGATGCCATGcgacccacctcctctcctcagtgAGACAGCCCATACCTAAACCTCCAGGACCCCACAGGATAGGAGAGAGATGTGAAGCCAGCTCTCGGCTCATGCTTTAAGGCccgagagagagacccagagacccAGACTCTGAGAGTTGTGGGTACACAGCGTTATCTAATGGATGGCAGAGTGACTAAGTGAAGGAAGGAACTCAGAACAGAACTGACGTGAGGTCATAATGAGTGGTCAGCAAGGCGAGCCGGCCATCGGCCACAGCCATGTTGGTGAGGTCAGGAACAACAACCAGAACAGCCATGTTGGTGAGGTCGAGAGCAACAACCAGAACCAGCAGGCCgggggagggggagtgggagcGGTGATACCCGATGGGGATGCTAATGCTAACCAGATGATCCagatgggggaggggggcagCGACGGCGGAGGGGAGAGTACAGGAGGAGATGTTGACACTCTGCCCCCCCTGATGTCTCAGACCACTGTGGTGTCTCAGACAGTCACAGAGGAGCAGAAGAACAAGATCGTCATCTGGGGGACAGACTCTCAGTGTGACGACCCTGAGCTGGCCGAGTTTGAGATGTTAGAATGTCAGGAGCTGGAGGCATACCTggtagaagaagaggaggaggaagaggaggcggaggaggtgGTATGTGTAGGAGTAGGAGTGAAAGGAGGTGCACGGCAGATCCTCCTGGACCAGCCTGTCTCCATAGTGGATCTAGTCtctgacagtagagagagaggagggaggaggactaTTCAACGGGGCTCCGGCGGGCAGGACGCCGCCATCATGGACTCTGGAGGAACCAAAGGGACGGCGGAGTATGTGACGAGGACAGAGTTCAGCTCTGAGAACCATGTCTTGGTGTCCCGCCTGTCCACTATGTCCACTCTGGATGGGAGTCTGGTCAGTGCTCTGGACGCCGCTGGACGGACACAGGCCACCACCACAGACTCCTGGCACGTCCCCTCTGGACCCTCAGGATCAGACGGGACCATCTTAGAGGATCTCACCCTGGCCTCCCAGTCTTGTATCACCATCTCAGACCAGTCCAAGGCCTCTCAGCCATCCAAACAACCTCAGGCTCCATCTAAAAGCACAATACAACGAGCTGACCTCGATCTAAACCAGAACACAACTGTTAGGTCTGGGGAGGTTGTCGTTCCGGAAGCACAAGTCAGTGACAACGTCGTAGTGGGTCGTTGTAAATGTCAGCAGAACACGGAGGAAGATCAGGGCAATGAAAAGCACAACCAGAATCTGGAGCAGAGGTACCAGGATGTTAGAGGCAGTGAAGGGAAGGCAGCTGAGGAACACCAAGATGCTAGAGTTAGTGGGGGAAAGGCAGCTGAGGAACACCAAGATGCTAGAGGTAGTGGGGGGAAGGCAGCTGAGGAACACCAAGATGCTAGAGGTAGTGGGGGGAAGGCAGCTGAGGAACACCAGGATGCTAGAGGTAGTGAAGGAAAGGCAGCTGAGGAACACCAAGATGCTAGAGGTAGTGGGGGGAAGGCAGCTGAGGAACACCAAGATGCTAGAGGTAGTGGGGGGAAGGCAGCTGAGAAACACCAAGATGCTAGAGGTAGTGGGGGGAGAGCAGCTGAGGAACACCAAGATGCTAGAGGTAGTGGGGGGAAGGCAGCTGAGGAACACCAGGATGCTAGAGGTAGTGAAGGAAAGGCAGCTGAGGAACACCAAGATGCTAGAGGTAGTGGGGGGAAGGTAGCTGAGGAACACCAAGATGCTAGAGGTAGTGGGGGGAAGGCAGCTGAGGACCACAAGGTTATTCCCCCTGATATGAACCACAACTCACCCGCCAAGTTAGGCACAAATGGGATTCAATCTGTTGAAACCAGAAGCTTGAAGAAGCTCGGCTCTTTTGATAAAACTTCAAAGGAACAAGGCTCCTTCGGACAAAGCATGAAGAAAACGACTTCATTTGAACAAAGCATAAAGAAAACAACCGTGTTTGAAAACACCACAAAGAAGTCGGCCTCATTTGATAGAAGTTTGAAGAAAGAACCTTTCTTAGATAGAACGTTGATGAAAGAGGCATCCTTCGACAGAACGTTGAGGAAGCAGGGCTCGTTTGAACGCAGCTCCAGTCCTTCTAGCCTGGATGGGAGGAAGCCTTGGGGTAGCCCAAGCAGGAGCCCCAGCCGCCCCGCCACCCCTCCCTGGTCCCCCAGGAGACCAGCCCCCTCCTCCCCCGCCAAGACCAGCTCCagacctccctcctccacctctccagccAAGGCCAGCAACCAAGCCTCCAGCCAGGACCGCAGCGACTCCCCACAGAGGGGTACCACCAGTGGCCTCAAAGCACCTAGTAAGGTATGTGTAATCAGCAGCATCCCCAAACCCATCTCCCCTCAGCCACCTGCGGACCCTAGGAGGGCCTCTCCTCACACACCCAAACCCATCTCCCCTCAGCCACCTGCGGACCCTAGGAGGGCCTCTCCTCACAAACCCAAACCCGCCCGTCCAAAGATCATCACGTACGTCCGTAAGAACCCCCAGGGGAAGTCCCAGGGGACGGAGGTTGACCCAAATGAAGCCTTGACAATCCCTCTCCGCCTGTCCTCTTCCCACCCCAGCCCTCCTACAGCCCACAGGAAGCCCCACAAGACAGGGCCCCATTCTAAGGCCTCACAGGTGCTCTGCTCCTCTAATATACTATTTGATAAGTACCGGCAGGAGATGCAGAAGGCAGGATACTTTCCCCCGGGTACCGGCATGACGTCGCTGGGCATCAAACCTCCCAGCCACCCTCCTCCTCACAACCTCTCTTTGAACTCTGAGAGCTTTCATGGGGAATTGCCTGACAGATACATGCATGAGCTGGCTCCAGCACCTTCACAGCTGGCTCCCCAGGAGGGGACAGGCCTCTACCGTTCCCCCAGGCCCAGAGGGCCCCAGCTGGGGTTAGGGGCCGTCACCCGGCAGCCTGCTGCAGCCAAGAACAGGACTATGTTCCAGGGCCAGAccggtcagaggtcaggggtcgtGACCCTCAGCCATCCAGGACAGCAACAGGCACCGCCAGGGAACAACCAGGGAAACCACGACTCCACAGCAGACCAGAGGACGCCAGGTCCAGAGACCACCGTGGCCAGGACCCTGCTGCCTAAACCGGGTCAGTCTCGTCTGCGACCCCCAGGCTTCTCGGCCTTGCCACCTGCCCGTCTGGTCGCCTTCGGCTTTGTACGCAGCTCCAGTGTCTCCTCGGTTTCCAGCAACCAAACGACAGTGAGCAACCACAGCGACCCCTGCCGACCCTCCCAACCCTGGCGGTACTACTGCTACCACAAGGCCAGACTGTGTTGTCTGGAGACTGGCAGTACTACTGCTACCACAAGGCCAGACTGTGTTGTCTGGAGCCTGGCGGTACTACTGCTACCACAAGGCCAGACTGTGTTGTCTGGAGCCTGGCAGTACTACTGCTACCACGAGGCCAGACTGTGTTGTCTGGAGCCTGGCGGTACTAATTCTACCACGAGGCCAGACTGTGTTGTCTGGAGCCTGGCGGTACTACTGCTACCACGAGGCCAGACTGTGTTGTCTGGAGCCTGGCAGTACTACTGCTACCACAAGGCCAGACTGTGTTGTCTGGAGCCTGGCAGTACTACTGCTACCACAAGGCCAGACTGTGTTGTCTGGAGCCTGGCAGTACTACTGCTACCACAAGGCCAGACTGTGTTTTCTGGAGCCTGGTGGTACTACTGCTACCACGAGGCCAGACTGTGTTGTCTGGAGGCTGGCGGTACTACTGCTACCACAAGGCCAGACTGTGTTGTCTGGAGCCTGGCAGTACTACTGCTACCACAAGGCCAGACTGTGTTGTCTGGAGCCTGGCGGTACTACTGCTACCACGAGGCCAGACTGTGTTGTCTGGAGCCTGGCAGTACTACTGCTACCACAAGGCCAGACTGTGTTGTCTGGAGCCTGGCGGTACTACTGCTACCACGAGGCCAGACTGTGTTGTCTGGAGCCTGGCGGTACTACTGCTACCACAAGGCCAGACTGTGTTGTCTGGAGCTTGGCAGTACTTCTGCTACCACAAGGCCAGACTGTGTTGTCTGGAGCCTATCAGTACTACTGCTACCACAAGGCCAGACTGTCTTGTCTGGAGCCTGGCGGTACTACTGCCACCACGAGGCCAGACTGTGTTGTCTGGAGCCTGGCAGTACTACTGCTACCACAAGGCCAGACTGTGTTGTCTGGAGCCTGGCGGTACTACTGCTACCACAAGGCCAGACTGTGTTGTCTGGAGCCTGGCGGTACTACTGCTACCACAAGGCCAGACTGTGTTGTCTGGAGCCTGGCGGTACTACTGCTACCACGAGGCCAGACTGTGTTGTCTGGAGCCTGGCGGTACTACTGCTACCACAAGGCCAGACTGTGTTTTCTGGAGCCTGGCGGTACTACTGCTACCACGAGGCCAGACTGTGTTGTCTGGAGCCTGGCGGTACTACTGCTACCACAAGGCCAGACTGTGTTGTCTGGAGCCTGGCGGTACTACTGCTACCACAAGGCCAGACTGTGTTGTCTGGAGCTTGGCAGTACTTCTGCTACCACAAGGCCAGACTGTGTTGTCTGGAGCCTATCAGTACTACTGCTACCACAAGGCCAGACTGTGTTGTCTGGAGCCTGGCAGTACTACTGCTACCACAAGGCCGGACTGTGTTGTCTGGAGCCTGGCGGTACTACTGCTACCACGAGGCCAGACTGTGTTGTCTGGAGCCTGGcaGTCCAAGCAGTGGTAGTGATGACATCCCCCTTCACCTGTCCCCTGTACCCCCCAGCCAGAGCAGCCCCCAGCCCCCCAACGCCCCTGCCCTCCACCGCCGCTCCGTGCAGCCCCCGGCCCGGGTCTCTCCCACAGtccgAGGTAGACCAGCAGATCGTGGTGGGTCAGAGGTCGGAGGTCAGGAGTGTGAGCGTGCCCTGGTGCAGAAGCTGAGAGAGCGCTGTGAGGACCAGGCTCGACAGCTCCTGTCTCTGCAGGCTGAACTGAAGAGGGCTTCTCTTGGACTAGAGGTGTTTGCCATTACTACACAGCACTTCTGCCACAAGAGTGAGAGTGCCATCCTGAAGGAGAGGGAACTGTCCCTGGAGCTTGCCAGGATCAGGGATGAAGTGGCCTCAAGTGTGTCGCGGTGGGAGATTCTGCAGCAGGACAAGGGGGAGTTGGAGCGGAGGTTTGAGCGGGAGCTGGAGGGTCTGCGTGCCCAGCAGCAGAGTGAGCTGGGCCGGCTGGAGGAGAGACTGAGGCAGTATCACAGCCTAGAGATACAGCGCCTGGAGGCCCAACGACAGGAGCAGCTGGAGAGACTGAGGACACAGCAGCTGGAGCAGATGGAGGAGGTGACGGAGAACCATGAGGAGGCTCTGACTGAAATGGAGAACAACCACAACGACACGCTGGTCACTCTCAAGGAGGAGCATGCCAGGACTGTCAAAAACCTGAAGATGGCCCATGAGCAGCAGAGGAAGTCATTGGAAGAGGACTTTGAGAAGCTCAGACTGTCGCTGCAGGACCAGGTGGACACGCTGACGTTTCAGAACCGCAGCCTGAGAGACCGAGCCAAGCGCTTTGAGGAGGCTCTACGCAGGAGCACCGACGAACAGATAGTGGATGCTCTGGCTCCATACCAGCACATTGAGGAGGATCTGAAGAGCTTGAAGGAAGTTCTTTTAATGAAGAATCAACAGATCCACGAACAGGATGTCAAGATCTCAGAGCTGGAGAGAATGGCCCAAAAGAACGTGTTCCTGGAGGAAAGAGTGCAGATGTTACAGCAGCAGAATGAAGACCTGAGGGCCAGGATAGACAAGAACCTAGCCATGTCCAGACAACTCTCGGAAGAGAACGCCAACCTCCAGGAGTCAATGGAGAAGGAGAGCAACGAGAAGAAACGCTTGAGTCGGAACAACGAGGAGCTGCTGTGGCGTCTGCAGAGCCCTCACATGTCCCCCACCGGCTCCCCCATCCACCGAGGCTCTCccatcctccactcctccaacacctCCTCCCCTGGTCACCACCGTTCCTCCGCTGGCCCTGGGTCACCCGCACGACCGCACTCCTACCACCAATGAGACGCCTCTCCTCAATGCCTTCCCATCGTCTCCATCTCCCTAATCTCCTTTTCCAGATGAGGGGGATGATGGAAGAGCATTTCTTCCTCCCACTacatcccttcatccatccactGACTTCGTCCATCCCACTGACTTCGTCCATCCCACTGACTTCATCCATCCACTGACTTCATCCATTCACTGACTACATCCATCCACTGACTCCGTCCATCCACTGACTTCATCCATCCACTGACTTCATCCATCCCCTGACTTCATCCATCCACTGACTTCACCCATCCACTGACTCCGTCCATCCACTGACTACATCCATCCACTGACTCCGTCCATCCACTGACTCCGTCCATCCACTGACTTCATCCATCCACTGACTTCATCCGTCCACTGACTTCATCCATCCACTGACTCCGTCCATCCACTGACTTCATCCGTCCACCGACTTCATCCGTCCACTGACTTCATCCATCCACTGACTCCGTCCATCCACTGACTTCGTCCATCCACTGACTTCATCCATCCACTGACTCCGTCCATCCACTGACTTCATCCATCCACTGACTTCATCCATCCACTGACTTCATCCATCCACTGACTTCATCCATCCACTGACTCGTCTTGGGAAGTCCCTTcctttttctctccctttttTTAATATGGAGGACGGAGGAACTTCTCCTTCTACCCACAAcgtctctccttccatccattcATCCCCGGAACTCTGGGACTTTTCATCCATCATTTTCCTCTTTAATTTTTATTCTCTTTATTTAATCAACGTTCTATCCCGACGAGGGAGAAATATGTCTCCATCCAGTCAACTCCAGAAACGTTTTCCCCCTTAGTGCATATTAGTGTCCCTATCTAAGGATAGTTGGCTTCAATGCTGACCAGACccgtttgagggggggggggggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2386457 lncRNA upstream 17380 45473868 ~ 45475843 (+) True G2086658
TU2386428 lncRNA upstream 50137 45442866 ~ 45443086 (+) True G2086644
TU2386427 lncRNA upstream 52011 45440762 ~ 45441212 (+) True G2086643
TU2386418 lncRNA upstream 62900 45430049 ~ 45430323 (+) True G2086634
TU2386414 lncRNA upstream 70692 45421933 ~ 45422531 (+) True G2086630
TU2386448 lncRNA downstream 38 45664343 ~ 45673089 (+) False G2086653
TU2386447 lncRNA downstream 1846 45666151 ~ 45673089 (+) False G2086653
TU2386449 lncRNA downstream 1846 45666151 ~ 45673089 (+) False G2086653
TU2386446 lncRNA downstream 1958 45666263 ~ 45673089 (+) True G2086653
TU2387037 lncRNA downstream 11876 45676181 ~ 45677370 (+) True G2087136
XM_021588547.2 mRNA upstream 5514 45480328 ~ 45487709 (+) False LOC110508103
XM_021588546.2 mRNA upstream 5514 45480331 ~ 45487709 (+) False LOC110508103
XM_036965702.1 mRNA upstream 14157 45443905 ~ 45479066 (+) False usp16
XM_036965061.1 mRNA downstream 38860 45703165 ~ 45791795 (+) True foxo1a
XR_005039993.1 mRNA downstream 112714 45777019 ~ 45777979 (+) False LOC118944695
XM_036964714.1 mRNA downstream 539292 46203597 ~ 46349567 (+) False LOC110508109
XR_005039992.1 mRNA downstream 687690 46351995 ~ 46354652 (+) True LOC118944693
XM_036965247.1 mRNA downstream 711014 46375319 ~ 46411167 (+) False nek3
TU2386442 other upstream 5486 45486637 ~ 45487737 (+) True LOC110508103
TU2385505 other upstream 1083173 44408053 ~ 44410050 (+) True G2085969
TU2384668 other upstream 1373984 44118223 ~ 44119239 (+) True G2085314
TU2384422 other upstream 1759329 43732395 ~ 43733894 (+) True G2085122
TU2384320 other upstream 1960645 43532270 ~ 43532578 (+) True G2085037
TU2387070 other downstream 132794 45797099 ~ 45798593 (+) True G2087149
TU2387599 other downstream 658779 46323084 ~ 46323694 (+) True G2087569
TU2387647 other downstream 829617 46493922 ~ 46496887 (+) False G2087592
TU2387649 other downstream 829617 46493922 ~ 46496887 (+) False G2087592
TU2387650 other downstream 829617 46493922 ~ 46496887 (+) False G2087592

Expression Profile