RNA id: XM_036964714.1


Basic Information

Item Value
RNA id XM_036964714.1
length 2072
RNA type mRNA
GC content 0.51
exon number 4
gene id LOC110508109
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 46203597 ~ 46349567 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCCGCCCCTGGATGGACGTTGGTGTGATTGATGTTCCCCTGTAGAGCGTGTTTCACAGACTCTCCGCTCACAGCAGTCTGGATGTGTTTCCGCGGCTGGCGTCAGCTCCAACTCCAGCTCTGTCCGCAGCGTTGCTCTTTCACTGCTCACAGCAAGATAACATATTTGGGGATCTCTATTGCCAACTACTACATTGCTCATCAACGCTGAAAGttacagcttttttttttttttttaccgatACCATTACTTATTTTGGGGATAATtattttgggattttttttgttaGTCGATCTGTGAAGTTAGTTTCAGTTTTCGGTTTTCTCCGCGATTGGGATATTAAGACCAGAAGACTAATCTAACAACCAAGTCGTTCATCATgGGACAGAAGTCAGTCAgtaggaggggagagacagagacatgctgGTAGTCTGTGGTGGAGTCAAGAGCACAACAAAAGCTAAatctcattttttttttgtctattcTGGCAACTTAGTCTTCTAGTTATATAATAGTGAACTTTTTACCCATCAATCGCCATGGCCTCCAGCCTGACCTGTGCCGGTGTAATCTGgaccctcctctccctgctctgcGCCGCGGCCTCCTGTGTCGGCTTCTTCATGCCTTACTGGCTGCTCGGTTCCCAGATGGACAAGCCGGTCTCGTTCGGCACCTTCCGACGGTGCTCGTACCCGGTGCGCGACGAGGAGAGCCAGGCCACAGTGATCCTGGAGCAGTGTGGGCGCTATGCTTCCTTCCAGGGGATACCTAGTCTGGAGTGGAGGATCTGTACGGTGGTGACGGGCGTGGGCTGTGGTCTGCTGCTCCTGGTAGCCCTCACAGCCCTCATGGGATGTTGCATCTCTGACCTCATCTCCAGGACCGTCGGACGTGTGGCCGGGGGGATACAGTTTGTTGGAGGTCTGCTGATAGGGTCTGGCTGTGCTCTCTACCCGCTGGGCTGGGACAGTGAGGAGGTCCGACAGACCTGCAACAACACCTCCGACCAGTTTGAACTGGgttccTGTGAGATTGGCTGGGCCTACTACTGTACGGGTGCTGGGGCCGCTGCTGCAATGCTGCTGTGTACCTGGATGGCCTGTTTCTCAGGGAAGAAACAGAAGCAGTACCCCTACTAGATGAACCagttgggggaggaggaggagaggagggggttacCCCTACTAGATGAACCagttgagggaggagaggagaggagggggtagccCTACTAGATGAACCagttgggggaggaggaggagacgaggGGGTACCCCTACTAGATGAACCagttgagggaggagaggaggagaggagggggtaccCCTACTAGTTGAACCagttgggggaggagaggaggagaaggtgtAGCCCTACTAGATGAACcagctgggggaggaggaggagaggagggggttcccCTACTAGATGAACcagttggtggaggaggaggagaggagggggttcccCTACTAGATGAACCagttgggggaggagaggagaggagggggtagccCTACTAGATGAACCagctggtggaggaggagaaggggtacCCTTTCTAGATGAACTagctgggggagggaggaggagaagggatagcccttctcctcctcctgagAGCACCCTTATTAGAagaacatcccaaatggcacccgattccctatagAGTgtgttacttttgaccagagccctatggccacTGGGGGATAAtactgcactataaagggaatagagtggCATTTGGAAGGCATCCTAGAGGAGCCACTTGGtgggaggaaagagaagagacaggcctacagactactacagactactatagactactacaggCTACTGCAGGCTACCACAGACTACTACAggctactacagactactacagactatTACAGGCTACCACAGACTACTACAGGCTACTACACTACCGGTAGAACATTTTagaatacctactcattcaagggttttctttatttttactattttcttcattgtagaataatagtgaagacatcaaaactatgaaataacacatatggaatcatgtagtaaccaaaaaaaagtgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2387461 lncRNA upstream 9820 46191787 ~ 46193777 (+) True G2087504
TU2387441 lncRNA upstream 36353 46166968 ~ 46167244 (+) True G2087486
TU2387419 lncRNA upstream 46177 46120699 ~ 46157420 (+) True G2087466
TU2387397 lncRNA upstream 145806 46054048 ~ 46057791 (+) True G2087444
TU2387395 lncRNA upstream 147659 46040389 ~ 46055938 (+) True G2087442
TU2387481 lncRNA downstream 60 46349627 ~ 46351873 (+) False G2087509
TU2387504 lncRNA downstream 60 46349627 ~ 46353885 (+) False G2087509
TU2387472 lncRNA downstream 2393 46351960 ~ 46353885 (+) False G2087509
TU2387475 lncRNA downstream 2431 46351998 ~ 46354481 (+) False G2087509
TU2387476 lncRNA downstream 2431 46351998 ~ 46354481 (+) False G2087509
XM_036965061.1 mRNA upstream 411802 45703165 ~ 45791795 (+) True foxo1a
XR_005039993.1 mRNA upstream 425618 45777019 ~ 45777979 (+) False LOC118944695
XM_036965045.1 mRNA upstream 539292 45493223 ~ 45664305 (+) False mtus2b
XM_021588547.2 mRNA upstream 715888 45480328 ~ 45487709 (+) False LOC110508103
XM_021588546.2 mRNA upstream 715888 45480331 ~ 45487709 (+) False LOC110508103
XR_005039992.1 mRNA downstream 2428 46351995 ~ 46354652 (+) True LOC118944693
XM_036965247.1 mRNA downstream 25752 46375319 ~ 46411167 (+) False nek3
XM_036965250.1 mRNA downstream 25752 46375319 ~ 46411167 (+) False nek3
XM_036965251.1 mRNA downstream 25752 46375319 ~ 46411167 (+) False nek3
XM_036965252.1 mRNA downstream 25752 46375319 ~ 46411167 (+) False nek3
TU2387070 other upstream 405004 45797099 ~ 45798593 (+) True G2087149
TU2386453 other upstream 673658 45529456 ~ 45529939 (+) True mtus2b
TU2386442 other upstream 715860 45486637 ~ 45487737 (+) True LOC110508103
TU2385505 other upstream 1793547 44408053 ~ 44410050 (+) True G2085969
TU2384668 other upstream 2084358 44118223 ~ 44119239 (+) True G2085314
TU2387647 other downstream 144355 46493922 ~ 46496887 (+) False G2087592
TU2387649 other downstream 144355 46493922 ~ 46496887 (+) False G2087592
TU2387650 other downstream 144355 46493922 ~ 46496887 (+) False G2087592
TU2387651 other downstream 144355 46493922 ~ 46496887 (+) False G2087592
TU2388024 other downstream 677552 47027119 ~ 47028563 (+) True G2087865

Expression Profile