RNA id: XM_036965250.1


Basic Information

Item Value
RNA id XM_036965250.1
length 1628
RNA type mRNA
GC content 0.54
exon number 15
gene id nek3
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 46375319 ~ 46411167 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGGACTGCACCTTGCCACGTCATACAATAATACGGAAGCAGAGCGGTGGACAAAGAATACCGAACACACGCGGATAACGTTGACACAATCCCACCAGAAAAGTCAATGCCAGTGTGACAATGGATGGGTACTCGGTCCATAAAGTAATAGGTGAAGGGTCCTTTGGTCGGGCACTACTTGTCCAATCCAGAATCAACCGTGAGAACTATGTCATGAAAGAGATCCTACTCCCAAAGACACAATCCAAGATGGCGAACACCAGAAGAGAAGCTGTGCTCCTGTCCAGGATGAAACATCCCAGCATAGTGGCCTTCAGGGACTCTTTTGAAGGCGACGGCCACCTCTACATAGTGATGGAATTCTGTGGTGGAGGAGACCTGCTCCAGAGGATACAACGACAGAGGAACACACTGTTCTCACAGGAAACAATTCTGAAGTGGTTTGCTCAGATGTGTTCTGGTACGATGCACATCCATGACAAACGGGTCCTACACAGGGATCTCAAGTCCAAGAATATCTTCCTGACAGACGATGGCACGGTGAAGCTGGGTGACTTTGGCTCAGCCTGTGTTCTAAACAGTGCGAAGGCCTACGCTCACACATACGTTGGAACGCCTTACTATGTGTCTCCAGAGATCTGGGACAGTAAGCCGTACAACAACAAGAGcgaTGTGTGGTCTCTCGGCTGTGTCCTCTACGAGCTCTGCACCCTGCGACACCCGTTTCAGGCTCCTAGTTGGAAGAGTCTGATCATGAAGGTGTGCCGTGGTTCCTACCCTCCTCTTCCCCAACACCTGCCctatgagctgcactacctggtCAAACAGATGTTCAAGACCAACCCCAAAGACCGTCCGTCCCTCCACACCATCCTCACGTCTCACCGCGTAGCCGGTCTCCTGCACCGACACCTGCCCAACAAGGAGTcggagaggagaacagggagatggaggagagaggagggggagaaggtggCCTCACTCCTAGGGCAGAAGACCCTCATCACAAGCTCTACCCTGGAGGGTCTGGAGATCTGTGTGGCCCCTACTGAGGCCCCTGCTGAGGCCACTGCTGAGAGCAGCACCAATAGAGAGCATCGTGGCCCTCGTAGACAGTGGGCCCCAGGCCCCTCAGACACAGCTCTACAGGTGTTGGCTAACAcagacctcctctcctctgggAGTCTGGCAACCACAGGCCAGACACATTCAGAGAACAGAGAGCGGAGACGATGGGACAGGAGTCCACCAGAGAAGCTACTGAGACTGTTAGAGAAAGCCCAGCTCTCCACTGCTTTCAGAACCTACTCCATACACACAGAAGgtgaaGACCCTCTGGTAGGCCCCCTGTCCCGGGGAGGAAGGGACGACACAGACGGACCGACAgctggacagacagaggatgaaGAACGGCTGCAACCACGCTCTGACGACGAGGATACAGACTTTGAAGAGGACTGTCCCTGTGACTGGATGGAGGAACTGGAGCAGATGTCTATGGACCACTGATACCTAGCGGTCTACCTAGCGGTCTGCCTAGCTAGCGGTCTGCCTAGCTAGCGGTCTGCCTAGCTAGCGgtctgtctagctagctagcggtCTGCCTAGCTAGCGgtctgtctagcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2387614 lncRNA upstream 15720 46358506 ~ 46359599 (+) True G2087580
TU2387613 lncRNA upstream 15963 46358506 ~ 46359356 (+) False G2087580
TU2387500 lncRNA upstream 20838 46351998 ~ 46354481 (+) False G2087509
TU2387496 lncRNA upstream 21434 46351998 ~ 46353885 (+) False G2087509
TU2387659 lncRNA downstream 23687 46434854 ~ 46435799 (+) True G2087594
TU2387694 lncRNA downstream 31772 46442939 ~ 46454547 (+) True G2087624
TU2387698 lncRNA downstream 35446 46446613 ~ 46447586 (+) True G2087626
TU2387661 lncRNA downstream 41891 46453058 ~ 46497945 (+) True G2087596
TU2387712 lncRNA downstream 47361 46458528 ~ 46461373 (+) True G2087633
XR_005039992.1 mRNA upstream 20667 46351995 ~ 46354652 (+) True LOC118944693
XM_036964714.1 mRNA upstream 25752 46203597 ~ 46349567 (+) False LOC110508109
XM_036965061.1 mRNA upstream 583524 45703165 ~ 45791795 (+) True foxo1a
XR_005039993.1 mRNA upstream 597340 45777019 ~ 45777979 (+) False LOC118944695
XM_036965045.1 mRNA upstream 711014 45493223 ~ 45664305 (+) False mtus2b
XM_036965783.1 mRNA downstream 162054 46573221 ~ 46576187 (+) False cysltr2b
XM_036965784.1 mRNA downstream 162054 46573221 ~ 46576187 (+) True cysltr2b
XM_036965065.1 mRNA downstream 168453 46579620 ~ 46758317 (+) False fndc3a
XM_036965064.1 mRNA downstream 180415 46591582 ~ 46758317 (+) False fndc3a
XM_036965066.1 mRNA downstream 216730 46627897 ~ 46758317 (+) False fndc3a
TU2387599 other upstream 51625 46323084 ~ 46323694 (+) True G2087569
TU2387070 other upstream 576726 45797099 ~ 45798593 (+) True G2087149
TU2386453 other upstream 845380 45529456 ~ 45529939 (+) True mtus2b
TU2386442 other upstream 887582 45486637 ~ 45487737 (+) True LOC110508103
TU2385505 other upstream 1965269 44408053 ~ 44410050 (+) True G2085969
TU2387647 other downstream 82755 46493922 ~ 46496887 (+) False G2087592
TU2387649 other downstream 82755 46493922 ~ 46496887 (+) False G2087592
TU2387650 other downstream 82755 46493922 ~ 46496887 (+) False G2087592
TU2387651 other downstream 82755 46493922 ~ 46496887 (+) False G2087592
TU2388024 other downstream 615952 47027119 ~ 47028563 (+) True G2087865

Expression Profile