RNA id: XM_036965783.1


Basic Information

Item Value
RNA id XM_036965783.1
length 1586
RNA type mRNA
GC content 0.49
exon number 2
gene id cysltr2b
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 46573221 ~ 46576187 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGAAAGTCAAGTGCATCTAGGGTTGATCCTGCAAACAACAGTCCTCAGCTCAGCCTACTCCACTCTGGAATGAAGTCTCGCTGTGGCAGTACACCCCTGGATCTGAGATGAACAGCTGCTGATCGTCAATACAGTGTTGACTGAAAAGTCAGGGTGCTTCTCATCATTAGTGTATCACAGAGCACTCTAAAGTGAAGAAATCAGTCATCATGGAAGATGGAAACTTGTCCTCTGACTGCTCCATCAGCATGTTCAAACACAGAGTCTACCCACCCGTATACCTAGTCATCTTCCTCCTCGGCCTCACCTTCAACCTCGTCTCCCTCTGCTTCTTCGTCAGTGTCTGGAGGAGTAAGAAAAAGTTTACTCCCGTCAACCTGTACATGGTCAACCTgctggtgtcagacttgatgctgGTGTGCTCCCTGCCACTCCGGGCCTTCTACTACTACATGGAATCTAGCTGGGTGTTTGGAGACATCGCCTGTCGCGTTATGTCCTACATCTTCTACATCAACATGTACGGGAGCATCTACTTCCTCACGGTGCTGAGTGTGGTTCGTTTTGTGGCAATCACCCAGCCGTACAGGTATATGAGCATGCAGAATAGCCGTAATTCCTGGCTGGTGTGTATATTGGTCTGGCTGCTGGTGTCGCTAGCCTCCATCCCTATGCTGACTTCAGGGACCGTCATAGATGCTTATGGTAGAACCAGGTGCTTGGAGCTTAATCCAGAATACAAGCTCATTCACATCCGCACACTGATCATAGCCAACCATGCCACCTTACTTCTGGGCTTCATCGTGCCCTTTGCAGTGATCTCTATCTGTTACATCTTTGTGGTGCGTAGCCTGCTGAAGCTGAGGAAGGTTGAAGGAAGGCCGAAATCCCAATACAAGAAGTCCATGTCCCTGGTTGTAATAGTCCTTAGCATCTTCCTAGTGTGTTTCCTGCCCTACCACGTCATGCGGACTGTCTTCCTGGAAGCTGAGATGCAGATGAGGGATAAAGGGTATGGAGATTCCTGTAGGTACATAGAGCGTGTACGTAAAGCAGCTGTTCTCACTTTGTGTCTGGCTGCGATGAACAGCTGCTTGGACCCACTTCTTTATTTCTTCGTTGGAGAGAACTTCAGGGTTTTCTGTCAGGGTGCTTACAAAGAGACGGAGGCAAAGTCACTGGctaagacagagggaaagaggaagggtCTGACATCAGGGCTACAGGAAGGAACACGTCCGACAACAGAGCTACAGGAAGGAACACGTCTGACATCAGAGCTACAGGAAGGAACACGTCCGACAACAGAGCTACAGGAAGGGACACATCCGACATCAGAGCTACAGGAAGGAACACGTCCGACAACAGAGCTACAGGAAGGGACACATCCGACATCAGAGCTACAGGAACGAAACGCTCCAAACAGCTCCAGACCTGATAGTTAGCCTGGGACAGGTTGGAAGTGAAATATGACTATATTTGATGGCTTTGAGAAGAAACTCTAGAGATGGTTATTTTCTGCTGACAACCCTAGAAGACAATATACAGCTAGGTATATCAATACAAATGATGTGTCCCATTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2387757 lncRNA upstream 27332 46545496 ~ 46545889 (+) True G2087664
TU2387750 lncRNA upstream 37093 46535508 ~ 46536128 (+) True G2087659
TU2387735 lncRNA upstream 47706 46510111 ~ 46525515 (+) False G2087654
TU2387743 lncRNA upstream 47869 46511535 ~ 46525352 (+) False G2087656
TU2387742 lncRNA upstream 47869 46518843 ~ 46525352 (+) True G2087656
TU2387837 lncRNA downstream 60433 46636620 ~ 46637423 (+) True G2087704
TU2387898 lncRNA downstream 132721 46708908 ~ 46709880 (+) True G2087756
TU2387804 lncRNA downstream 182015 46758202 ~ 46761993 (+) False fndc3a
TU2387808 lncRNA downstream 182015 46758202 ~ 46761993 (+) False fndc3a
TU2387809 lncRNA downstream 182015 46758202 ~ 46761993 (+) False fndc3a
XM_036965247.1 mRNA upstream 162054 46375319 ~ 46411167 (+) False nek3
XM_036965250.1 mRNA upstream 162054 46375319 ~ 46411167 (+) False nek3
XM_036965251.1 mRNA upstream 162054 46375319 ~ 46411167 (+) False nek3
XM_036965252.1 mRNA upstream 162054 46375319 ~ 46411167 (+) False nek3
XM_036965253.1 mRNA upstream 162054 46375319 ~ 46411167 (+) False nek3
XM_036965065.1 mRNA downstream 3433 46579620 ~ 46758317 (+) False fndc3a
XM_036965064.1 mRNA downstream 15395 46591582 ~ 46758317 (+) False fndc3a
XM_036965066.1 mRNA downstream 51710 46627897 ~ 46758317 (+) False fndc3a
XM_036965067.1 mRNA downstream 102011 46678198 ~ 46758317 (+) False fndc3a
XM_036965068.1 mRNA downstream 116232 46692419 ~ 46758317 (+) False fndc3a
TU2387647 other upstream 76334 46493922 ~ 46496887 (+) False G2087592
TU2387649 other upstream 76334 46493922 ~ 46496887 (+) False G2087592
TU2387650 other upstream 76334 46493922 ~ 46496887 (+) False G2087592
TU2387651 other upstream 76334 46493922 ~ 46496887 (+) False G2087592
TU2387599 other upstream 249527 46323084 ~ 46323694 (+) True G2087569
TU2388024 other downstream 450932 47027119 ~ 47028563 (+) True G2087865
TU2387877 other downstream 460855 47037042 ~ 47038403 (+) True prcp
TU2389161 other downstream 949253 47525440 ~ 47528548 (+) True G2088729
TU2389165 other downstream 956235 47532422 ~ 47537945 (+) True G2088732
TU2389353 other downstream 1277919 47854106 ~ 47864829 (+) True G2088870

Expression Profile