RNA id: XM_036965068.1


Basic Information

Item Value
RNA id XM_036965068.1
length 6780
RNA type mRNA
GC content 0.49
exon number 20
gene id fndc3a
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 46579620 ~ 46761993 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGTTAGCTGACTGTGGGGTGGTAGGTCAGGAGAAGGGCAGGGGTAGCTGACTGCTACAGAACTACAGAACGGACCAGTTATTAGCTACAGAACTGAGGAAGTATGGAGGAGGTATTAGCTACAGAACGGAGGAGGTATTAGCTACAGAACAGAGGAGGTATTAGCTACAGAacggaggaggtatggaggaggtATTAGCTACAGAACAGAGGAGGTATTAGCTACAGAACGGAGGAGGTATTAGCTACAGAACTATTAGCTACAGAACGGAGGAGGTATTAGCTACAGAACGGAGGAGGTATTAGCTACAGAACAGAGGAGGTATTAGATACAGAACAGAGGAGGTATTAGCTACAGAACGGAGGAGGTATTAGCTACAGAACGGAGGAGGTATTAGCTACAGAACGGTGGAGGTATTAGCTACAGAACGGAGGAGGTATTAGCTACAGAACGGAGGAGCAATGGATGAGGTATTAGCTACAGAACagaggaggtatggaggaggtGTTGGCTACAGGACAGAGGAGGTGTTGGCTACAGGACACTACAGGACAGAGGAGGTGTTGGCTACAGGACAGAGGAGGTGTTTGCTACAGGACAGAGGAGGTGTTTGCTACAGGACAGAGGAGGTGTTTGCTACAGGACAGAGGAGGTGTTTGCTACAGGACAGAGGAGGTGGTTGCTACAGGACAGAGGAGGTGTTGGCTACAGGACAGAGGAGGTGTTGGCTACAGGACAGCGGAGGTGTTTGCTACAGGACAGAGGAGGTGTTGGCTACAGGACAGCGGAGGTGTTTGCTACAGGACAGAGGAGGTGTTGGCTACAGGACAGCGGAGGTGACAGACATCCAGGCCAAAGGGGCAGTGTTGAGCTGGGTGGCCCCCAgcagggcagagggagagggggtcaGCCCCTCCCTGGAGCCTCTCAGTTACGATGTGTCCATCTCCTACAGCGGCAAGGACGGGAAGTACACCAGCATGTACAGTGGTGAACAACTAAGTGTAACTTTAGAAGACCTGAGGCCAGCAACAGACTACCACGTCAGggtcctGGCCGTGTGTTCAGGGCAGTGTTTACGCGGCAGTCCGTCCGAGGCAGTAGCCTTCACCACCCGGAGCTGCGAACCAGACCCCCCCTGCCCCCCCAGAAAGGCCAGTGGCTCCAAGAGCAGCACCCTCGTCCTCCAGTGGAAGGCCCCGTGTGACAACGGCTCCAAAATCCAGAACTACACGCTCCAGTGGGACGAGGGGAAGGGGACCGGGGGTTATGAGCAGTGTTACTATGGACCTCAGAAGCAGTATCGAGTCACCAAGCTCTCTCCAGCTTCAAGATACTCCTTCCGCCTCGCAGCCAAAAACGACATGGGTATAAGTGAGTTCTCTGAGACAGTGGACCTGTATACCTCGTGCAGCGTACCCTCCCCGCCCCTCCCTCCAGAGCTGGTGAAGGCAGGGGTGACCTGGTTGTGTCTGACCTGGCAGAGACCCTCCACTTCCCCCAAGGAGGACGATATCTTCTACAGCCTGGAGATGGATGAGGACGAGGGTTATGGCTTCCAACCCAGCTATGATGGTGATGAGCTATCCTGCACTGTCAAGAACCTGCACAGGAGCACCAAGTACAAGTTCAGGGTGGCAGCCTACAACACTGAGGGGAAGAGTAACCCCAGTCAGGTGGCAGAGTTCACTACCTgtccagacagaccaggaggaccATGTAGACCTGTCATCAGAGGCAGGGTACTGCCCAATTCCTTCAGACTGGCATGGGAACCTCCTAAAGATAATGGAGGGGCGGAAGTGACCAAATACGTGGTGGAGATATCTGAGGGACTAAGCGGTGTGTCGTGGGAGCTGGCGTACAGTGGTCCAGCCATGGAACATGTGTGTGAGGGGCTGAAGCCAGGCCACTCCTACCAGACCAGAGTTTACTGCATGAGTGAGGGGGGGCAAAGCCCACTGTCAGAGACTCTGCAGGTCCAGACTCCCGCGGTGCCCCCAGGGCAGTGCCAGCCGCCCCGCGTGGTGGGCAAGCCCAAGGCCAGAGAGGTGCAGCTACGTTGGGGACCGCCGTGTGTGGGCGGTGGCAGCCCGGTGTCGGTCTATAGTGTGGAGGTGTGTGGCGCTGGTCCTCAGGGGTCAACGGGTCAAGAGGAGGTCAGGGAGGTGTACCAAGGTTCGGAGGTCGACTGCACCGTGGGTAGTCTGCTGCCGGGACGGACGTACAGCTTCCGCCTTCGGGCCGCCAACAAGGCTGGGtacgGACCCCTGTCAGAGCATTGTGAGGTGACCATGGGCCCCGGGGCTCCAGAGCCCTGTAAGGCCCCTCACATCACCTGCAAGTCCCCTACTGTGGCTGTGGTCAGCTGGGAGGCTCCAGCATGTAACGGGGGGGTCATCTCAGAGTACCGTGTGGAGTGGGGGGCAGCGCAGGGCACCATGCAGGTGTGTTTCAGCGGTGCCAGCCTCACCCACGAGGTCAAGGGACTGCTGCCCGCCACCAACTACTTCTGCCGGGTTCAGGCTGTGAACGTGGCTGGCGTGGGTCTGTTCAGTGAGGCTGTCCTCTGTCAAACTCCTCCTTCTGTACCTGCGGCCGTCAGCAGCGTCCATGCCCTCAAAGAGGCGGAGCTACGGGGATACCACACCTCCACAgaccaggaggaagaggaggaagagggggaggaggaggaagatggaccCCGCAcgcctcctctctactccccctccacTTGTCTAGcTGTTGGTTGGGAGCCGCCGTGCGACCACGGGGCTGAGATCTCCTCCTACCTCATAGACCTGGGAGAGAGACAGTCCATCTCTGTCGGACCAGTCACCAAGTATATCATTCAGCATCTGCAACCGGACACCagctacaggattCGTATCCAGGCTCTGAACAACCTAGGATCAGGTCCGTTTAGCCACACCTTCAAGTTGAAGACCAAACCTCTCCCTCCCCAGCCCCCCCGGCTAGAGTGTACTGCGTTCAGCCACCAGACCCTCAGGCTGAAGTGGGGTGACGGACCGGCCAAGGCCACGCCCTCAGACGCCCTCCAGTACCAGCTGCagacagaggacaagagaggCAGgTTTGTCTCCTTGTACAGAGGGCCCTGCCACACTCACAAAGTCCAGCGACTCAATGAGTGTACCTCGTACATGTTCCGCATCCAGGCCTTCAACGAGGCGGGCCAAGGTCCCTTCTCCACGGTTTACACCTTCACCACCCCCCGCTCGCCGCCCGCCCCTATTAAAGctcccAGAGTGGAGCGTGTGGAGGACATGTCTTCAGTCTGTGAGGTGAGCTGGGAGCCCCTGCTGCCCATGAAGGGAGACCCCATCATCTACACGGTGCAAAGCATGATGGGTAACTCTGAGTACAAACAGGTGTATAAAGGTTCTGCTACGTCCTACCAGATGCCCGGCCTGCAGCCCAACAGTGAGTACCGCTTCAGGGTGTGTGCCATCCGCCAGTGCCAGGATGCTCCAGAGCTGAGTGGTCCCTACAGCCCCACGGTGACGCTCTCCCCCCAGCGCAGTGAGCTGTCAGCGGGCAGTGTGAGCAGTGTGGGCCCCCGGGCTGGAGCTGACCCCGCCAGGCCCTTAACAGATGAGCAGTGGGCTGCTCTCATCATCATGCTCTGTGCAGTCATCTCCATCCTCATCGCTTTCATCATCCAGTACTTTGTTATCAAGTGAGCTTGTATCTCCCTTGTTCTtctcctccgtctcctcctccccagttcctcccttccttctcctccaAGCTGCAGGGTTACAGCTTTAATTTCCTGTTGATGTTGTAGTTTATTTCTGTTGTCACCTCTGGGTGATTATGATTAGCACCGGTGAGGGAGTCCAGGAGGCAGGAAGTCCAGAGGAAATGATAGCTTCCTGTCTTCCCCCTCCCTAACCTCCCTTTACAGAAGCCTCTCAATGTTTAACAAGAAGACACCGCTGTGTTTCGTTACCCTGCACAGAGTAGAGTACCAcattatgagtcataatacccataacacctagaggtcgaacagggaaatggttccaattgtttttttttccacATAGTggatttttagaaacacttaaaaataagggctgtgtttgcGTGGAGGCTTGCCCTGTTGTGGCGTTTTGATAAAATCTCTTTCAGACAAAGTGACTTTCGTCAATATATTCACCCGTATTTACCCTGCAAAActtaaatgctaattagctgctaatgtggctatcataaagaactacaaataccatgatgatctggacgagactgccgaatCGAATTAACGATCTATTGTTAGCTCAATGgagtaatgaataaattggcaaaaataataataataaatggacTATTCTGACAACTGTCTTGTGCCAGTTTTTTAAGTTGACACAAAACACCTGTTAGctaaggtgtcagctagagatgacgtgccGGAGCTTGCTGGGATTTTGTCTACATGGATGCTATTTAGCATTTTCACATCTGAGAGTAAAATGGAGccaaaatatattgataaaagtcctAGAGAAATTTACAGGGTTATCAGAAATGTCCCGCCAGgctaagcctacacaaaacacagcccttcattttaagtgtttctaaaaaaaaTCCCCTATGTGGGAAAAAATGAACAgtggaaaaactattggaaccgtttccctgtttgaccgctaggtgttatgggtattggCATTGTGACATCTCCACTGTGAGGCTCTATACTTCATTGTGATTGGTTAACCTGTACAGAATGGATAATGAAGGAGCAGGGTTTTACAGTTAAAAGAAAAAGTTCACTCACCATGTACGTGTCCAaacatatatatgtatagatTATTCATTTATTTACATCGGTGGTTAAAAGGGTTCCGGTATGAAACTACGTTAGTATATAGGTTTATATTATATAGAATATGTGCTGTTAGGACCTGGGATCTGATTTGGCCAGTGTTTTGCACAGAAATGCACGATACACAGGTGTAGGTGTGCCACAGTTAAACATGCTGGCTTCACGACGTGCTCGTGGGAAATGGGAAGCTGGGAAATGGTACGTCTGACAGGATCAATAAGATTCAAGCTAGCTTTGATAGGCTTGCTAACGTCGCTTATaataaagttagctagcttaAGGTTGACAAATACGGTCAGACTAGCTACATTTATCCAAATTGATACGGTTGTTAACTGTCAGAAACAAATTTGTTTGTCATTTGTTTTGGTTGGAAAAGGTTTTAAGGTCAGTGGTGAAACCTCTCAATTCGAGTAACATCATTTTCTCAGAGTTTCCCCGCTTGTAATTCTGACTTGAAGGTCATTCAAGTGAAATTTCCAACTGTGAACTAGGACCATCCGATAACTCCGATTAGCATGTGAACACAGCAACAGTTAGGAAGTAGCTGGgcgagggggtggggggaggtcAGATTTCAGGTGTACCACAGAGATACCTAGGAAGGGGGAAGTGGCCACCACACCTTCTGTCGTTTATATAAAGGGTTAAATAGACAGGAAGAATATATATCCAATTCTTGTTTGCATTATAGAATGTTCATTTAGCACTTTCTAATTTTGTTGATGTTCAGAGGGGCGTAGGGACGCAGAAGTGGACTGGAGAAATGGTAGTATATTTTTGTATAGTGAAGACACAAGGGACATGTTAGTTGTTGGAGAAGTTAATCGCTCAGAAGTAGAGTTTAGGGGAAAATAAAACACATAAAACCAAACTAacacaatgatgatgatgatgaataattCTAATTATTTTTACTATCATATAGTTTATACTGTAGCTTGTATTCACAATCATGCAgaatatgttgttgttgttgttgttgttcaacaAAACATGTACTTCGCTTACTATCCATATTCtcttgtgttttttgtgtgtgttgttttttcaCTACTTCATTTTGCACCTTAAGTGAAAGAGGAAACCTCGACTGAATGTGTCTTGGTTTTGTTATCCATTTTTATAGAACTGCGTATTTTCAGATTGTACAAGCCCTACTGGTGTTTTGGGTGTGTTTTAAAAGTCCCAGTACCTACCACATGACGTGTTGTCATAGTAAcaacagatgttttttttttctcccgtTGGTATCAGACCAGTTTGTTGTTTTCAGAGGATTAAAGAAAACAACATAAACTTGGATGCATTTTCTtaatttctctcttttttttttatttttaattttttttaatttttagaaaacacaatttgttttttttgtttattttttattttttagcaaTATTGATTTGATGTTATCTAACATATAATACGTATAATATTAATCATGATGAAATTAAATAGTAGTTTTTTGGGGAGGATATCAACGTTTCTGATTTTATTTTTTGATTTCTTTACATCAGAGTCATTCATGTGAATATCTATTTTTTTATAAGATTGAAGTATATGGTATTATAACCAGAGAAAATAAGGAAACAGCTACGTAGATAAATAATCATAAACCATAATGAGTCAAAAACCACCGCAGATCAGAACTGTGTTAACTCGTACTTCCTGTTGATCTAAAGtttggccttttttttttttttgcggacACACACTTCCTTCACGCCATTTCACCCGGTGCGTGGTGCTACACGTCacggggcgggggggggggtcgtAGATTTTTTGCGGCGCCGTATGGGGGGCACACGGTATAGACCCAGCTGAGCACTCGCTCAAGTCTGGATGGTGGAATCTATCCAACGCACCCGCTACAGGTTTACTAGTGCAGGGAGGACACGGCAcgaatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2387837 lncRNA upstream 54996 46636620 ~ 46637423 (+) True G2087704
TU2387757 lncRNA upstream 146530 46545496 ~ 46545889 (+) True G2087664
TU2387750 lncRNA upstream 156291 46535508 ~ 46536128 (+) True G2087659
TU2387742 lncRNA upstream 167067 46518843 ~ 46525352 (+) True G2087656
TU2387787 lncRNA downstream 670 46758987 ~ 46761993 (+) False fndc3a
TU2387789 lncRNA downstream 670 46758987 ~ 46761993 (+) False fndc3a
TU2387802 lncRNA downstream 670 46758987 ~ 46761993 (+) False fndc3a
TU2387811 lncRNA downstream 670 46758987 ~ 46761993 (+) True fndc3a
TU2387943 lncRNA downstream 58776 46817093 ~ 46820232 (+) True G2087799
XM_036965783.1 mRNA upstream 116232 46573221 ~ 46576187 (+) False cysltr2b
XM_036965784.1 mRNA upstream 116232 46573221 ~ 46576187 (+) True cysltr2b
XM_036965253.1 mRNA upstream 281252 46375319 ~ 46411167 (+) False nek3
XM_021588563.2 mRNA downstream 16095 46774412 ~ 46783031 (+) True mlnr
XM_036965301.1 mRNA downstream 63610 46821927 ~ 46897922 (+) False zgc:153184
XM_036965300.1 mRNA downstream 63611 46821928 ~ 46897922 (+) True zgc:153184
XM_036965302.1 mRNA downstream 148533 46906850 ~ 46930260 (+) False LOC110508118
XM_036965303.1 mRNA downstream 156471 46914788 ~ 46930260 (+) True LOC110508118
TU2387647 other upstream 195532 46493922 ~ 46496887 (+) False G2087592
TU2387649 other upstream 195532 46493922 ~ 46496887 (+) False G2087592
TU2387650 other upstream 195532 46493922 ~ 46496887 (+) False G2087592
TU2387651 other upstream 195532 46493922 ~ 46496887 (+) False G2087592
TU2387599 other upstream 368725 46323084 ~ 46323694 (+) True G2087569
TU2388024 other downstream 268802 47027119 ~ 47028563 (+) True G2087865
TU2387877 other downstream 278725 47037042 ~ 47038403 (+) True prcp
TU2389161 other downstream 767123 47525440 ~ 47528548 (+) True G2088729
TU2389165 other downstream 774105 47532422 ~ 47537945 (+) True G2088732
TU2389353 other downstream 1095789 47854106 ~ 47864829 (+) True G2088870

Expression Profile