RNA id: TU2387808


Basic Information

Item Value
RNA id TU2387808
length 2536
lncRNA type sense_over
GC content 0.40
exon number 5
gene id fndc3a
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 46579620 ~ 46761993 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATGGGGGGCACACGGTATAGACCCAGCTGAGCACTCGCTCAAGTCTGGATGGTGGAATCTATCCAACGCACCCGCTACAGGTTTACTAGTGCAGGGAGGACACGGCAcgaatatacattttttttttaaaatcacatttaaaCCACTTATCTTTCCTCCAGTATTGTCTTGTGATGGATCTTGCGGTTTCATCGGGGAAGTAAACAAAATGGCGTCGCTGAATTCACGTTATGTTTTGCTTATTTCACGCAGCCACAGAATAGAAAGAAGCTAAACCAAATTATTTTTTGTATTTGAATTTCATTGTTTAAAGATGAGAGATAACGGTCACTCAAAGTAAGGGAATGTTCAATGAGGCTGGCTGTTTTAAGTCCTCCAGGATAATACGGTGTAGTTGGTAGATGATACGGTGTAGATGATATGGTGTAGTTGGTAGATGATACGGTGTAGATGATACGGTGTAGTTGGTAGATGATACGGTGTAGTTGGTAGATGATACGGTGTAGCTGGTAGATGATACGGTTTAGATGATACGGTGAAGTTGGTAGATGATACAGTGTAGTTGGTAGATGATACGGTGTAGCTGGTAGATGATACGGTGTAGCTGGTAGATGATACGGTGTAGCTGGTAGATGATACGGTGTAGATGATACGGTGTAGTTGGTAGATGATACGGTGTAGATGATACGGTGTAGTTGGTAGATGATACGGTGTAGCTGGTAGATGATACGGTTTAGATGATACGGTGAAGTTGGTAGATGATACAGTGTAGTTGGTAGATGATACGGTGTAGCTGGTAGATGATACGGTGTAGCTGGTAGATGATACGGTGTAGTTGGTAGATGATACGGTGTAGATGATACGGTGTAGTTGGTAGATGATACGGTGTAGCTGGTAGATGATACGGTTTAGATGATACGGTGAAGTTGGTAGATGATACAGTGTAGTTGGTAGATGATACGGTGTAGCTGGTAGATGATACGGTGTAGCTGGTAGATGATACGGTGTAGTTGGTAGATGATACGGTGTAGATGATACGGTGTAGCTGGTAGATGATACGGTGTAGCTGGTAGATGATACGGTGTAGTTGGTAGATGAAACGGTGTAGTTGCCCTCCAACAAATAGAAGACCAAGGACATCCGAAATCCATCAGTTTAACGCTGAAaccgaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtgtgtgtgtgtgtgtgtgtgtgtgagagaatctAATCGACACATAGTCTAATTCAATTACATAAATTCCAAAATACTGACATTTTAATCGATAACAAATTACATGACCTTCCCCTTGAAATCTATCAAATAAAATACTGAAGCCTTTTCAAATATACGAGGTAAACTGAGAACCATTGACAACACGATGACACAAGTCACTGAAAAGGATTGGGGAAAGGCTCAGTTAATCTGATTTTGTTCAATCGAAACACCAATCATTTAATCCCTGTGATTGACAGGTATAATTGCACGTTGACTAACCAAATCGCAGTGAAATTAGATAAATCTAGTCATGATTAGTTTCATATATTTAATTCAGTTAAATTTAGTAGATCGACTTAATAGCAGCAACCATTAACGTTTTTTGGGTTGGCTAGCAAGCTAAACTTGACGTTACACACCCGTTGACATTTGGGACCAATTTTTTTTCCAGCCACTCTGCAGCTAGCACGTTGAACAACGAACGTGGACGCGCATCGGACAGTCCTCGCACTCTGTAGCTAGCACGTTGAACAACGAACGTGGACGCGCATCGGACAGTCCTCGCACATTGAAAACCACACAGGCACCCGTTACGTATAACTCCGCCCACCGGGCAAAAATGGCATGAAAATGAATATGAAtccctctttttttttcttccccccccccccactgtgtgTTCCAAGTCTTTGTGACCGATTGCCGAGTTATGCGAGCTAATCAATGTAGTCTGTGATCAGGCAgtcttgtgttgtgttttgttatgGACAAATATGATTCTGGCTGTTGCAAccattataatgatgatgatacagGTACTTTGCAaacgtttttttttggggggggggggggggggggggattacatTGATTTGGTCGACCGGGCATCTTTTGATTTCTGATGTCTTAATTATTTTTTGTCGTTTTAAAAATAATTATAGAATTCCTAATTGTTTTTGTTTGATAGTGATTGCATCGTAACACCTCAGCGCGGTGACAGATCAAACTACTgggctgagggagagaaagaagacaCAAAAcgctacaacaacaaaacaacaattaaaatatgcacaaaaaaaaaagagaccatTTTTATGTAATTTTAATGTTTGCAGTTACCTCATAACACCGTACATTCCAAAATGAAAATTTGTTATACTACCAGTACCAGACATATCACTTTCAAATGTTCGTTATGGGAATAAAATTGTATAATCATAAGTATGTATCTAAAGTGTATCTGTATAGCCATGATATCTACAAAGATCCCATGCACAATAAAGATTTATAATTCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2387898 lncRNA upstream 48322 46708908 ~ 46709880 (+) True G2087756
TU2387837 lncRNA upstream 120779 46636620 ~ 46637423 (+) True G2087704
TU2387757 lncRNA upstream 212313 46545496 ~ 46545889 (+) True G2087664
TU2387750 lncRNA upstream 222074 46535508 ~ 46536128 (+) True G2087659
TU2387734 lncRNA upstream 232977 46520394 ~ 46525225 (+) True G2087654
TU2387943 lncRNA downstream 55100 46817093 ~ 46820232 (+) True G2087799
TU2387958 lncRNA downstream 80062 46842055 ~ 46848568 (+) True G2087812
TU2387982 lncRNA downstream 138610 46900603 ~ 46903258 (+) True G2087829
TU2387991 lncRNA downstream 153374 46915367 ~ 46915941 (+) True G2087833
TU2387994 lncRNA downstream 155904 46917897 ~ 46918268 (+) True G2087836
XR_005039994.1 mRNA upstream 13177 46742996 ~ 46745025 (+) False LOC118944696
XR_005039995.1 mRNA upstream 13177 46742996 ~ 46745025 (+) True LOC118944696
XM_036965783.1 mRNA upstream 182015 46573221 ~ 46576187 (+) False cysltr2b
XM_036965784.1 mRNA upstream 182015 46573221 ~ 46576187 (+) True cysltr2b
XM_036965254.1 mRNA upstream 347035 46375319 ~ 46411167 (+) False nek3
XM_021588563.2 mRNA downstream 12419 46774412 ~ 46783031 (+) True mlnr
XM_036965301.1 mRNA downstream 59934 46821927 ~ 46897922 (+) False zgc:153184
XM_036965300.1 mRNA downstream 59935 46821928 ~ 46897922 (+) True zgc:153184
XM_036965302.1 mRNA downstream 144857 46906850 ~ 46930260 (+) False LOC110508118
XM_036965303.1 mRNA downstream 152795 46914788 ~ 46930260 (+) True LOC110508118
TU2387647 other upstream 261315 46493922 ~ 46496887 (+) False G2087592
TU2387649 other upstream 261315 46493922 ~ 46496887 (+) False G2087592
TU2387650 other upstream 261315 46493922 ~ 46496887 (+) False G2087592
TU2387651 other upstream 261315 46493922 ~ 46496887 (+) False G2087592
TU2387599 other upstream 434508 46323084 ~ 46323694 (+) True G2087569
TU2388024 other downstream 265126 47027119 ~ 47028563 (+) True G2087865
TU2387877 other downstream 275049 47037042 ~ 47038403 (+) True prcp
TU2389161 other downstream 763447 47525440 ~ 47528548 (+) True G2088729
TU2389165 other downstream 770429 47532422 ~ 47537945 (+) True G2088732
TU2389353 other downstream 1092113 47854106 ~ 47864829 (+) True G2088870

Expression Profile