RNA id: XM_021588563.2



Basic Information


Item Value
RNA id XM_021588563.2
length 1067
RNA type mRNA
GC content 0.55
exon number 3
gene id mlnr
representative True

Chromosome Information


Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 46774412 ~ 46783031 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CGAACAACATGGAGATAGATGACCCGCACTACGAAGGCTCTCTGTTCCCCACCTCCACCCTCATCCCTGTTACCGTCATCTGTATCCTCCTCTTCCTGGTCGGCGTGTTGGGAAACAGCATGACCATCCTCATCATCCAGCGCTTCAAGGATATGAAGACCACCACTAACCTGTACCTGTCCTCAATGGCTGTGTCCgacctcctcatcttcctctgcCTGCCCTTTGACCTCTACCGTCTGTGGAAGTACGTCCCCTGGTTGTTTGGGGAGGTGGTGTGTCGTCTGTTTCACTACGTCAATGAGGCCTGTACGTACGCCACCATCCTCCACATCACCGCCCTCAGCATGGAGCGATACCTGGCCATCTGTTTCCCCCTCAGAGCTAAAGTTGTGGTGACCAAACGCAGGGTGCAGTACATCATTGTGGCTCTCTGGACTTTTGCTCTGCTCTCTGCTGCCCCCATGCTGTTTCTGGTAGGTGTGGAGTATGACAACGACACACACCCGGACTACAGTACGAGACAGTGTAAACATACCAACTATGCCATCAGGTCAGGGCAGCTGCACACAATGATCTGGGTCTCCACTACGTATTTCTTCTGTCCCATGTTCTGCCTGGTTTTCCTGTACGGCTCCATTGGACGGACGCTGTGGAAGAGTAAGAACGACCTGCAGGGTCCCAACGCCATGGCCCGGAAGAGGTCGCATAGACAGACCGTCAAAATACTGGTGATGGTAGTCCTGGCGTTTGTGATCTGTTGGCTGCCCTATCATATCGGCCGTAGCCTGTTTGCCCAGGTGGATGACTACGAGGAGGCAAAACTGAGCCAGGACTTCAACATAGGCTCCATGGTCCTCTGTTACCTCAGCGCCTCCATCAACCCTGTCCTCTACAACCTCATGTCCAGGAAGTACCGCGCCGCCGCGCGCCGCCTCTTCCTGCTTAGACACGAGCCCCACCCCCGACGCTATGGTAACAACAACCATCGACCAACCGGACATAGACAGCAGCTGTCCCTCAAAGAAGAAACCACCACACTGGACGATACCATGATCGGAGTGTAG

Function


GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016520 growth hormone-releasing hormone receptor activity molecular_function

KEGG:

id description
K04284 GHSR; growth hormone secretagogue receptor

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2387804 lncRNA upstream 12419 46758202 ~ 46761993 (+) False fndc3a
TU2387808 lncRNA upstream 12419 46758202 ~ 46761993 (+) False fndc3a
TU2387809 lncRNA upstream 12419 46758202 ~ 46761993 (+) False fndc3a
TU2387787 lncRNA upstream 12419 46758987 ~ 46761993 (+) False fndc3a
TU2387789 lncRNA upstream 12419 46758987 ~ 46761993 (+) False fndc3a
TU2387943 lncRNA downstream 34062 46817093 ~ 46820232 (+) True G2087799
TU2387958 lncRNA downstream 59024 46842055 ~ 46848568 (+) True G2087812
TU2387982 lncRNA downstream 117572 46900603 ~ 46903258 (+) True G2087829
TU2387991 lncRNA downstream 132336 46915367 ~ 46915941 (+) True G2087833
TU2387994 lncRNA downstream 134866 46917897 ~ 46918268 (+) True G2087836
XM_036965065.1 mRNA upstream 16095 46579620 ~ 46758317 (+) False fndc3a
XM_036965064.1 mRNA upstream 16095 46591582 ~ 46758317 (+) False fndc3a
XM_036965066.1 mRNA upstream 16095 46627897 ~ 46758317 (+) False fndc3a
XM_036965067.1 mRNA upstream 16095 46678198 ~ 46758317 (+) False fndc3a
XM_036965068.1 mRNA upstream 16095 46692419 ~ 46758317 (+) False fndc3a
XM_036965301.1 mRNA downstream 38896 46821927 ~ 46897922 (+) False zgc:153184
XM_036965300.1 mRNA downstream 38897 46821928 ~ 46897922 (+) True zgc:153184
XM_036965302.1 mRNA downstream 123819 46906850 ~ 46930260 (+) False LOC110508118
XM_036965303.1 mRNA downstream 131757 46914788 ~ 46930260 (+) True LOC110508118
XM_036965306.1 mRNA downstream 163839 46946870 ~ 46959779 (+) True guca1c
TU2387647 other upstream 277525 46493922 ~ 46496887 (+) False G2087592
TU2387649 other upstream 277525 46493922 ~ 46496887 (+) False G2087592
TU2387650 other upstream 277525 46493922 ~ 46496887 (+) False G2087592
TU2387651 other upstream 277525 46493922 ~ 46496887 (+) False G2087592
TU2387599 other upstream 450718 46323084 ~ 46323694 (+) True G2087569
TU2388024 other downstream 244088 47027119 ~ 47028563 (+) True G2087865
TU2387877 other downstream 254011 47037042 ~ 47038403 (+) True prcp
TU2389161 other downstream 742409 47525440 ~ 47528548 (+) True G2088729
TU2389165 other downstream 749391 47532422 ~ 47537945 (+) True G2088732
TU2389353 other downstream 1071075 47854106 ~ 47864829 (+) True G2088870

Expression Profile