RNA id: XM_036965300.1


Basic Information

Item Value
RNA id XM_036965300.1
length 3096
RNA type mRNA
GC content 0.52
exon number 6
gene id zgc:153184
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 46821927 ~ 46897922 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAACTGTTGTGCGAGAAGAGTGGCACCAATGCAACTGCGCGCAAAACTGAAGCCTCcgccactccctctctctccttcgatCAACCTCGTCTCGTACACTGCCTGTGAAGATATGACAGTGTAGTTATCTGTAAACACAGACCTCCGCTGTTCAAGGAGTGTGCTCacatctctcattccctctccgcGTTAGTAGTGTAGGAGAGCTCTCCAGCCTCTGAAGTGGCTTCGCTCAAACGCAGCAGCGCGGTCATccgaggagacagagaagagggcAGGAAAAGGTGCATATCGCGAATTCCTCAAGGATGGAGCAGGACTCACCGGTCAAGTCTTCGGTGGCCGAGTTGGCCGGGAGATTCAAAGATCACGTCATGCCGACGCCGACTCCGCACGACGAGAGGAAGCCTGTTAAAAGGAGGCCTCCTCCGGGCTCCCTGCAGCTTCACGACGTGAAACATGACCACGGGGAACTGGAGAAACCCAGCATCGTCTCTCCACACCCCCCCAAATTCAAGATGAAGACTTCCAAGAGTTCCCCCCTCATCGAGAAGCTGCAGgcaaACCTAACCTTGTCGCCCACCTCTCTGCTACCCTCGCCCAAGAGTCCCGAGGTGAAGCTGGCGCCGACGCCCATCTCCCCCGCAACCCATTGCTTCTTTCCCACAAGCCCCTGCAGCCCCACCCTGAGGCCCCAGCTGtccagtgaggaggaggagccgGTATGCTTTGAGAGCCCGGCGGAGGGGACCCCATTACTCAGCTTCAACAAGagTCGAGTTCGGCTGTCCTTCAAGAGGCGTCCGCCCACACGGCAGCACCGGCAGTCGTGTGTCGAGGAGGGCGTAGTCTCCGAGGGAGGGGTTGTGTCCCAAGGTAACCAAGACGTCCCCCAGGTGAACGGGGCCGAGGACCAGGTGGATCAGGTGTTTGAGCAGACAGGGGAGGGCGGGGAGAGGGGCGAGGAGACCCAGGGAAGCCCCCCGTCTCACCCAGACACTCTGACAGAGACTGGAGACAATGACAGGGACAGAGAACAGGCCAAAGAGGACAACGTtctggaggaggagacaggagaggcagCCCCAGCCACCCAGGATGGGAAGAAGGAAGCTGGGGAACAGGCGCTAGGTGAGCCCCAAGCTTCAGATTCTCTGGAggccatagaggaggaggaagggtctTGTAGCTCTTATGGAACAAAAGGAGACAACACGCAAACAGACGAACAGGAGGATTCAGCTCAGCCTCGTGAGAGGGATGAAAACCTCTGAACAATGTTCATAAATCACTGTTGAAGAAATCATACAATCAGTCATTGCGTGAGTCCCACGTGGCACCCTACAGCTtaatagtgctctacttttgaccagagacctggttaaaagtagtgcactatataaggaataggggtgtcatttgggatgcatcctcacTAATTATGAAACTAGCTTGTCTTCTAAGAACCCTCGTTGGACATTCTGTATCCTGCATAATCTTGGTTCCCAGAACTAAATCTGTCCTTGCTTCTTCACCTGTCACATTGAATTGTGTCTGTAGAGCAGTGTATGTAGACAATCCTCTGCATAGCTTTGTGTTCTATCAGATACTGTTGGAGGTGATACTTTCTTGTTTCTGCAGCAGTTTAAAGTAATAATTATCTTTATAGTATTTGGCCCAGGTGTCTCACCTCTCCTGGTTACCTCTCACCTCTCCTGGTTACCTCTCACCTCTCCTGGTTACCTGTCACCTCTCCTGGTTACCTCTTACCTCTCCTGGTTACCTCTCACCTCTCCTGGTTACCTCTCACCTCTCCTGgtcacctctcacctctcctgGTTACCTGTCACCTCTCCTGGTTACCTCTCACCTCTCCTGGTTACCTCTCACCTCTCCTGGTTACCTCTCACCTCTCCTGGTTACCTCTCACCTCTCCTGGTTACCTGTCACCTCTCCTGGTTACCTCTCACCTCTCCTGGTTACCTCTCACCTCTCCTGGTTACCTCTCACCTCTCCTGGTTACCTCTCACCTCTCCTGGTTACCTGTCACCTCTCCTGGTTACCTCTCACCTCTCCTGGttacctctcatctctcctggttacctctcacctctcctggttacctctcatctctcctggtcacctctcatctctcctggtCACCTGTCACCTCTCCCGGTCACCTGTCACCTCTCCTGGTCACCTCTCAACTCTCCTGGTCACCTGTCACCTCTCCTGGTCACCTCTCCTGatcacctctcacctctcctgGTCACCTCTCCTGGTCACTTCTCCTGGTCACCTCTCCTGGTCACCTCTCCTGGTCACCTGTCATCTCTCCTGGTCACCTGTCATCTCTCCTGGTCACCTCTCCTGGTCACCTCTCCTGGTCACCTCTCCTGGTCACCTCTCCTGGTCACCTGTCACCTCTCCTGGTCACCTCTGCTGGTCACCTCTCCTGGTCACCTCTCCTGGTCACCTCTCCTGGTCACCTCTCCTGGTCATCTCTCTCACCGGAGGACCAGGCAGCTTGTCAAGCTCTATGACACTAGAGCAGAGTGTGAATTATTGATAATATTGATCCTTTGACTGAGACTCTCTCCCGACAGCGAGACACATCAACCTCAGTGGAGACAGTCACCTATCTCTCTGAGGCTGCTGTCGGAGGAAAAAGAGTAGGACATTTATTCGAAGGACAACTATGAAACatcatttaatttgattttattttttattgttcacCTTTTTGGGGAAGCATGGCTTCATTTGGCTTCCATTAATacacagatgtctctttccatgtGCGCAGCCTGCAGGTAGCCTACTCTTttaaagtgatttgtttgacaatcagatagTTGTGTTCATGccatattaaaatgtcatactttttttctttctttctttcttttttttttacctttacatGACATTAGAGCGTTTCCTGGTTTCCACAGAAACAGCTGTTGTCTTTACATGGCAATGATCATACAGACCAGCCGCAAGTCAATACGCAACACTCTGGTTGgaagaaaaataaacattttaaagaaAAGTaagtaagaaagaaagagagaaagaaagaaagaaagaga

Function

GO: NA

KEGG:

id description
K18615 RCSD1, CAPZIP; CapZ-interacting protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2387943 lncRNA upstream 1696 46817093 ~ 46820232 (+) True G2087799
TU2387787 lncRNA upstream 59935 46758987 ~ 46761993 (+) False fndc3a
TU2387982 lncRNA downstream 2681 46900603 ~ 46903258 (+) True G2087829
TU2387991 lncRNA downstream 17445 46915367 ~ 46915941 (+) True G2087833
TU2387994 lncRNA downstream 19975 46917897 ~ 46918268 (+) True G2087836
TU2387865 lncRNA downstream 38891 46936813 ~ 46937184 (+) True G2087727
TU2387996 lncRNA downstream 45060 46942982 ~ 46943760 (+) True G2087838
XM_021588563.2 mRNA upstream 38897 46774412 ~ 46783031 (+) True mlnr
XM_036965068.1 mRNA upstream 63611 46692419 ~ 46758317 (+) False fndc3a
XM_036965302.1 mRNA downstream 8928 46906850 ~ 46930260 (+) False LOC110508118
XM_036965303.1 mRNA downstream 16866 46914788 ~ 46930260 (+) True LOC110508118
XM_036965306.1 mRNA downstream 48948 46946870 ~ 46959779 (+) True guca1c
XM_021588558.2 mRNA downstream 73365 46971287 ~ 46972031 (+) True LOC110508116
XM_036965304.1 mRNA downstream 80181 46978103 ~ 47003404 (+) False rab30
TU2387647 other upstream 325041 46493922 ~ 46496887 (+) False G2087592
TU2387649 other upstream 325041 46493922 ~ 46496887 (+) False G2087592
TU2387650 other upstream 325041 46493922 ~ 46496887 (+) False G2087592
TU2387651 other upstream 325041 46493922 ~ 46496887 (+) False G2087592
TU2387599 other upstream 498234 46323084 ~ 46323694 (+) True G2087569
TU2388024 other downstream 129197 47027119 ~ 47028563 (+) True G2087865
TU2387877 other downstream 139120 47037042 ~ 47038403 (+) True prcp
TU2389161 other downstream 627518 47525440 ~ 47528548 (+) True G2088729
TU2389165 other downstream 634500 47532422 ~ 47537945 (+) True G2088732
TU2389353 other downstream 956184 47854106 ~ 47864829 (+) True G2088870

Expression Profile