RNA id: XM_036965302.1


Basic Information

Item Value
RNA id XM_036965302.1
length 2066
RNA type mRNA
GC content 0.42
exon number 9
gene id LOC110508118
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 46906850 ~ 46930260 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATATTAGGGCACATTCCTACAGGACCGAAGTAACACATTCTAGCCTACTCAACAAGCGTCAAAAGTCCTGGAAAATGCCTATGGAATGAAATCTAAACGTTGTATGGGAACAGACATTATTGACAGGGAAAGCTGCTTCCGTTGGTCTTCTATTTGACACATTTGGGAACTCTCTTTTCTTTTATTCTTTCTCGCTCTGAGTAAAGACAACGCCTTCTTCCGTCTCCATCGAAACTTGACAAGGAAAAGTCACCTGGGACAACCCAGCTGGGCAGGGCAGAAAGGAATAGTCTAATGGAAGTCGTATCACAACGCTGATTAGACTACAACAATATTTTCATAACTTATCATGTATGTCAGTATTGATTAAATCTTCGTTATTGAACATAGCCTACTGTCTTGAGACTGATAAAGGGTAAAATCGTCTCATAGTTCCGGGTTTGTGGAAATTATTCCCGAGTATTGTAATAACTTGAGAAACATGGACAGCATCGAGTTACAGCCGGTTCAAAGCCTTGACAACAACAATCACCATGCTGAAAATACCTCTAAGCAACAGATGACTTCAGGTAATAGACCTATGCTGACCACCAATGACGCAGCAGAGGAAGGAAACCCCCTGCTTTCTCCTGAACAGGTTCCTGTCGATAATGGCGGGCATCATTGGGTTGATGGACAAGAGGTCAACCAAGAGTCGATCTCTCTCAACGTACAGAACAGCATCGCCAACAAAGAAATGACCTGCATGGTGCACAGAAGACGGTGGATGatcctcatcttcctcatcttcctcatcctGCTGGTGATTGGAGTCTCCTTCGCTGTGTGTTTAGGAATCCACGATGACATAGACGAGAAGTACGATCCAGCGCTGTTTGAGCTGCCGCGATGTTTCAACGGAAGCTTCAGACTGACCAATCAGATATTCATACCAGATCTGCTATCCCCAGCGTCCAATCAGAGTAAGACCCTGTCCAGCCAACTGCAAGAGAAGtTGTCTGACCTCTACAGTTCATCTCCGGCCCTGGGTCGCTACTTCTCCAGTGTtgaaatctctgacttcagAAACGGCTCTGTGCAAGCTGACTACCGGCTGAGGTTCCTGATGCCCCGGAATAATACTGAGTTGGAGCAGTTCACTCTGAGCAGAGAGATGGTGTATAATGTCTTCAGACAGTCTCTCTATGACCAAGACCCTGAGCTCAAccacccactgtatatacacccgGCTTCACTGGACATGCAGgTTGGCTCAGTGACTAGTGAGAGCAGAAGTGGCGTGCTGTATTGGTGACGACTACGCAATACTCTGGGGAGTTTCCCAGCAAAGAGATTTGAGCAGATCCAAGAGACCCATCTGATTGAGTGGAATATCTGACGGCTACGTAGAACCCATGGAccaacccagacacacacacaatgaaaccCTGTGAAACTGGATCACTACTGCTGTGTCAGTGGCATGTACAACCTGACAGACTGTATGACAAATAGACATTGATGATACTTTTCTGCACATTCCAATCATTCCATCTATCTCAAGTAGCCAAGAGAATGGAAAGGCCTAAGTGTACTTTTGGAATGAGGATAATGGGGTGTTGACATTAAGTGTTTGTCTGACGGTGAATTATTTTGTTTGCATGTTAAGTGTCAAAGTGGATTAACAATGTCTGTGGCCAAGCCAGATGTTTTTATCCAAGATGTTTTTATCCAAGATGTTTTTATCCAAGATCTTTTTTATCCAAGATGTTTTTATCCAAGATGTTTTTATCCAAGATCTTTTTTATCCAAGATGTTTTTATCCAAGATGTTTTTATCCAAGATGTTTTTATCCAAGATCTTTTTTATCCAAGATCTTTTTTTTAATCCAAGATCTTTTTATCGGTTGTAATATGACTTCCTGATACCTACTCTATAGTCTATATATCATGTCTGAGAGAACTAACTATTCCAATTTGAGGCATTGCTTCAATCTCTATATTCTTtcacattttacattttacatgAATTGATTGGAAACTGTATTTTGTAATTTtgtgaaataaatgttttgttttttattgtA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2387982 lncRNA upstream 3592 46900603 ~ 46903258 (+) True G2087829
TU2387958 lncRNA upstream 58282 46842055 ~ 46848568 (+) True G2087812
TU2387943 lncRNA upstream 86618 46817093 ~ 46820232 (+) True G2087799
TU2387787 lncRNA upstream 144857 46758987 ~ 46761993 (+) False fndc3a
TU2387865 lncRNA downstream 6553 46936813 ~ 46937184 (+) True G2087727
TU2387996 lncRNA downstream 12722 46942982 ~ 46943760 (+) True G2087838
TU2387863 lncRNA downstream 90308 47020568 ~ 47022349 (+) False prcp
TU2387871 lncRNA downstream 102007 47032267 ~ 47035518 (+) False prcp
TU2387869 lncRNA downstream 105330 47035590 ~ 47035929 (+) True G2087731
XM_036965301.1 mRNA upstream 8928 46821927 ~ 46897922 (+) False zgc:153184
XM_036965300.1 mRNA upstream 8928 46821928 ~ 46897922 (+) True zgc:153184
XM_021588563.2 mRNA upstream 123819 46774412 ~ 46783031 (+) True mlnr
XM_036965068.1 mRNA upstream 148533 46692419 ~ 46758317 (+) False fndc3a
XM_036965306.1 mRNA downstream 16610 46946870 ~ 46959779 (+) True guca1c
XM_021588558.2 mRNA downstream 41027 46971287 ~ 46972031 (+) True LOC110508116
XM_036965304.1 mRNA downstream 47843 46978103 ~ 47003404 (+) False rab30
XM_036965305.1 mRNA downstream 48067 46978327 ~ 47003404 (+) True rab30
XM_036965299.1 mRNA downstream 90241 47020501 ~ 47056921 (+) False prcp
TU2387647 other upstream 409963 46493922 ~ 46496887 (+) False G2087592
TU2387649 other upstream 409963 46493922 ~ 46496887 (+) False G2087592
TU2387650 other upstream 409963 46493922 ~ 46496887 (+) False G2087592
TU2387651 other upstream 409963 46493922 ~ 46496887 (+) False G2087592
TU2387599 other upstream 583156 46323084 ~ 46323694 (+) True G2087569
TU2388024 other downstream 96859 47027119 ~ 47028563 (+) True G2087865
TU2387877 other downstream 106782 47037042 ~ 47038403 (+) True prcp
TU2389161 other downstream 595180 47525440 ~ 47528548 (+) True G2088729
TU2389165 other downstream 602162 47532422 ~ 47537945 (+) True G2088732
TU2389353 other downstream 923846 47854106 ~ 47864829 (+) True G2088870

Expression Profile