RNA id: XM_036965306.1


Basic Information

Item Value
RNA id XM_036965306.1
length 2417
RNA type mRNA
GC content 0.50
exon number 4
gene id guca1c
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 46946870 ~ 46959779 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATGCAGCAAGAGTCAGCCAGTTGCAGTGTTGTTCTCCACTACGCCTCACCTccctccggctcctctctctgcagGCAGGCCCCAGACCCCAAGGCCCACACCACACCTCTCTCCTAGGCAGAAGCAGAACGTGTCTGTAGGAGTAAGAAAGTATGGGCGCCTACGAGTCTAACCTGGACGATATCCTGGCAGAGGACATGCACCACTGGTACAACAAGTTTATGAAAGAGTCTCCTTCGGGACTCATCACGTTGTTTGAGCTGAAGACGATGCTGGAGATGCAGGGGATGACAGAAGAAGCTAGCAGCTACGTGGACCAGGTCTTCTTTACCTTCGACATGGACGGGgatGGATACATAGACTTCGTAGAGTACATAGCAGCAGTCAGTCTGATGCTGAAAGGAGAAATCAACCAGAAACTGAAATGGTACTTCAAACTGTTCGATCAGGACGGAAACGGCAAGATTGACCAAGATGAAATGGGGACAATATTCAAGGCAATCCAGGACATCACCAGATGTTATGACCCTCCTACGGAGGAGATTGTGACCCTCATCTATGAGAAGGTTGACATAAATAACGAAGGTGAGTTGACTCTGGAGGAGTTTATCGAAGGAGCCAGGGACCACCAAGACATCATGGAGATGCTGGGAAAGATGATGGACCTCACCAACGTTCTGAAGATCATTGTCAACGGACAGAAAAAGCAGGTCAAATCACCCGAATGAGGATGACGTCACTTCCTGTTGCACTTCCTGTTTTGTGGAGAAAGAATAGGATTGTTTTGGGGACGGAAAGCAATTATAGTGGAAtgtttaatatataatatatggaGGAAATGTATAAAAGAACAAACGACGAACTTGAGCATCTTGATGAGAAGGTGAATATAcatgaatgggaggggagccatGTCCCAAATCTCCATCGACCAAGAAGACTGAGTTGATGTAAGGACAATGGAACCATGCCAGGAGGCCATGTGACCTACTCTATGTTCTCTATTTCTACATCCCGATTGTCTTTTTCACCCTTTTCCCAAAGTCCCATCATAGATTTAACCACGCTGGAAACCCTCTAGGCAATGATTACACCAATTAAATACTTTGAGATCAAATGACAGGAAGTGTGGAAGTGCAAGTGTAGAGAATTGGGATGCAGACTatatgttctctctgtgtgtatcacttgagtatcctcctcctctcactgtcACCACAGCTCTTCTCTAgtcctcctgctcctgctcctagtctcacagtcaccacagctctctctggtcctcctcctgctctcacagtcaccacagctctctctaatcctcctcctgctctcaaagtcaccacagctctctctaatcctcctcctgctctcacaGTCACCACAGCTCTCTCTAGTTCTCCTCATCTCAGTCACCACAGCTCTCTCTagtcctcctcctgctctcacaGTCACCACAGCTTTCTCTAgtactcctcctctcacagtcACCACAGCTCTCTCTAGTCCTCCTCATCTCAGTCACCACAGCTCTCTCTagtcctcctcctgctctcacagtcaccacagctctctctagtcctcctcctgctctcacaGTCACCACAGCTTTCTCTAgtactcctcctctcacagtcaccacagctctctctagtcctcctcctgctcccacagtcaccacagctctctctagtcctcctcctgatcctcctctctcagtcaccacagctctctctagtcctcctcctcctgctcctcctctaaCAGTCACCACAGCTCTATCTagtcctcctcctgctctcacagtcaccacagctctctctagtcctcctcctgctctcacagtcaccacagctttctctagtcctcctcctcctcacagtcaCCACAGCTCTCTCTAGTCCTCATCCTGCTCTCACAGTCACCACAGCTCTCTCTAGTCCTCATCCTGCTCTCACAGTCACCACAGCACTCTCTAGTCCTCCTCATCTCAGTCACCACAGCACTCTCTAGTCCTCCTCATCTCAGTCACCACAGCTCTATCtagtcctgctcctcctctcacagtcaccacagctctctttagtcctcctcctgctcccacagtcaccacagctctCTCTAGTCCTCCTCATCTCAGTCACCACAGCTCTCTctagtcctcctcctcctcacagtcaCCACAGCTCTCTTTAGTCCTCCTACTGctcccacagtcaccacagcttTCTCTAGTACTCCCCCTCTCACAGTCACCACAGCTTTCTCTAGTACTCCCCCTCTCACAGTCACCACAGCTCTCTCTAGTCATCCTCCTGCTCTCACAGTCACCACAGCTCTCTCTagtcctcctcctgctctcacagtcaccacagctctctctagtcctcctcctgctctcacagtcaccacagc

Function

GO:

id name namespace
GO:0031284 positive regulation of guanylate cyclase activity biological_process
GO:0005509 calcium ion binding molecular_function
GO:0008048 calcium sensitive guanylate cyclase activator activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2387996 lncRNA upstream 3110 46942982 ~ 46943760 (+) True G2087838
TU2387865 lncRNA upstream 9686 46936813 ~ 46937184 (+) True G2087727
TU2387994 lncRNA upstream 28602 46917897 ~ 46918268 (+) True G2087836
TU2387991 lncRNA upstream 30929 46915367 ~ 46915941 (+) True G2087833
TU2387982 lncRNA upstream 43612 46900603 ~ 46903258 (+) True G2087829
TU2387863 lncRNA downstream 60789 47020568 ~ 47022349 (+) False prcp
TU2387871 lncRNA downstream 72488 47032267 ~ 47035518 (+) False prcp
TU2387869 lncRNA downstream 75811 47035590 ~ 47035929 (+) True G2087731
TU2388028 lncRNA downstream 80333 47040112 ~ 47040808 (+) False G2087869
TU2388029 lncRNA downstream 80333 47040112 ~ 47040808 (+) False G2087869
XM_036965302.1 mRNA upstream 16610 46906850 ~ 46930260 (+) False LOC110508118
XM_036965303.1 mRNA upstream 16610 46914788 ~ 46930260 (+) True LOC110508118
XM_036965301.1 mRNA upstream 48948 46821927 ~ 46897922 (+) False zgc:153184
XM_036965300.1 mRNA upstream 48948 46821928 ~ 46897922 (+) True zgc:153184
XM_021588563.2 mRNA upstream 163839 46774412 ~ 46783031 (+) True mlnr
XM_021588558.2 mRNA downstream 11508 46971287 ~ 46972031 (+) True LOC110508116
XM_036965304.1 mRNA downstream 18324 46978103 ~ 47003404 (+) False rab30
XM_036965305.1 mRNA downstream 18548 46978327 ~ 47003404 (+) True rab30
XM_036965299.1 mRNA downstream 60722 47020501 ~ 47056921 (+) False prcp
XM_021593118.2 mRNA downstream 114751 47074530 ~ 47076721 (+) True LOC110513068
TU2387647 other upstream 449983 46493922 ~ 46496887 (+) False G2087592
TU2387649 other upstream 449983 46493922 ~ 46496887 (+) False G2087592
TU2387650 other upstream 449983 46493922 ~ 46496887 (+) False G2087592
TU2387651 other upstream 449983 46493922 ~ 46496887 (+) False G2087592
TU2387599 other upstream 623176 46323084 ~ 46323694 (+) True G2087569
TU2388024 other downstream 67340 47027119 ~ 47028563 (+) True G2087865
TU2387877 other downstream 77263 47037042 ~ 47038403 (+) True prcp
TU2389161 other downstream 565661 47525440 ~ 47528548 (+) True G2088729
TU2389165 other downstream 572643 47532422 ~ 47537945 (+) True G2088732
TU2389353 other downstream 894327 47854106 ~ 47864829 (+) True G2088870

Expression Profile