RNA id: XM_036965299.1


Basic Information

Item Value
RNA id XM_036965299.1
length 3296
RNA type mRNA
GC content 0.44
exon number 9
gene id prcp
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 47020501 ~ 47056921 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCtctcttcatactgtactgtctctgCACTTTTGATTTGCTGACTGGCAACTTGACTTCCTCTTAGTGAAACATCAACAAATGTTAACTAGGTTCCTCCTTCCTACTCACAGCTGCATCATGCGACTGCAGCCCACACAGATCACTTTATATAGACTATTCAGACAGGTTGTTCTGTAGAATCGTCCTGGCCACTGCAGATATGAGGTCTGGAGGATTCGTTTCGGTATCCAGACCGGTCATAACGTCCATCGTTCTCATCTTATCGCTCTATTGTTTTCATGTGTTTGCGCTCAAGTCGCAACTTTTGACGAGGCATGGCGGGGTTACAGACCTCAATGCTCAGGACACCGTCATCAACTATGAAACATGCTATTTTGACCAGAAGATCGATCACTTTGGTTTCCTGGAGGATGGCACCTTTAAGCAGAGATACCTGGTTAATAATGAACACTGGGATCAGAAGGGAGGGCCTATCTTGTTCTACACCGGCAATGAAGGAGACATTACCTGGTTCTGCAATAACACTGGTTTCATGTGGGACGTTGCAGAGGATCTGGGAGCCATGTTGGTGTTTGCAGAGCACCGTTACTATGGAGAATCCCTGCCGTTTGGACAAGACTCTTACAGTGACACCAAGCACCTGAATTACCTGACGTCGGAGCAGGCGCTAGCTGACTTCGCTGTGCTCATCAGAGAACTGAAGAGGAAGGTGCTTGGAGCTCAGGAAAGTCCTGTGATCGCCATCGGAGGGTCCTACGGAGGGATGCTCTCtgcctggttgagaatgaaatacCCTAATGTTGTTGTTGGAGCTCTGGCTGCCTCTGCCCCCATATGGCAGTTCCCTGACATGGTTCCATGTGGAGATTTCTATAAGATAGTCACCCAGGACTTCGCCAGGAGTGGACTGAACTGTGACGTTAACATCCGGAGGTCCTGGAAGGCCATCGACAACATCTCAGCAACTGATGACGGCCTCCAATGGCTGTCCGGGGAGTTTAGCTTATGTTCCCCACTCAAGAAGACGGACTTGGACGGTTTTAAGGCCTGGCTCCAAGAGACCTGGGTGAATCTGGCCATGGTTGACTATCCTTACGAAGCTAACTTCCTCCAACCTCTCCCACGCTGGCCAATACagGTGGTGTGCAAACACCTTAGCTTTGACCCCAGCAGTGTGTCAGACTACCAGCTGTTAGGGGGTATCTCTGAAGCTGCTAGAGTCTACTACAACTACACAGGAAACTGTCCTTGTCTCAACACTTCCTCTACGGCTACAGGGAACCTGGGCTTCATCGGCTGGTACTACCAGgCGTGTACAGAGATGGTGATGCCACTCTGCACTGATGGGGTGCAAGACATGTTTGAGCCCCAGGACTGGAACTTCCAGGCCTTCTCAGATGAGTGCAACTCCCTGTTCGGGGTGCGTCCTCGGGCTGACTGGGCAGCGACCGTCTACGGAGGACTGGACATCGCTTCTCACAGCAACATCATCTTCAGTAACGGAGGACTGGACCCGTGGTCAAGTGGTGGGGTGACCCGAAACATCTCGGACTCGGTGGTTGCCATAGTGATACCTGACGGAGCTCACCACCTGGACCTACGCTACAACAACGAGTATGACCCTCACACCGTCCTCTCAGCCCGCATCCAGGAGGTGGAATACTTCAAACTGTGGATCACACAGGCCAGGAAACTACAAATACCAGGTTAAATCAGTCTGAACTACAACTGCCAGGCTAAATCACTCTGAACTACAACTACCAGGTTAAATCACTCTGAACAACTGCAAGGCTAAATCACTCTGAACTACAACTCCCAGGTTAAAGCACTCTGAACTACAACTCCCAGGTTAAAGCACTCTTAACTACAATTACTAAATCAAGCAGAACTAAAACTGCCAGACTAAATCACTCTGAACTTAAACACCCAGGGTTGGCctgaaatgtcaccctattccctatatagtgcactacttttatccaGGACCCCCTaggactctggtcagaagtagggcACTAGATGCAGCCCCAGCCTCTCAAACTACCTGAAGCTGAAAAACCATAGCATATAACATGTGGCTTTGTTGCAATGCCCTCTCTAGCATACTACTAAGAAGGGAGCAATGTATTGAACGTGTATTCTAAGTGATATGCTAGTGTGGACattgaaaccaaggctttttttgCATCCCAAAAgtgaccctattccctatatagtgcactacttttgaccagagcccatatggACCCTGTttaaaaaggagtgcactatgaagggaatagggtgccatataaTACCAACGTTCTCTACCACGAGAATGTACTGATGTATGTTCAGTGGAATATTGTTTTTCAGATGTGTTCGAGTTTAAGGAAGATCTACTTACACCAATAATCAGGTTTAGTTAAGTAACTATTTCAATGTTGATTTGTTGATTTCAATGATTGTTTAcagtgttctctgttttgtgccAAAGTCTCTTTTTTTATTACGAGTCAGAAAGGGCTAGAATATCAAATgttaaaaacaaaataaatattttcttaatttgAAAATTAAAGACATTTTCACATAACACCAGATTAGATCATTCAGTTACAGTATTTATTAATTGTGTTTAATTGACATTTGATAgcttacacatactgtatatcagaACAACAATTGTGTTTATTGGATAATtagtacaaaaaaaatatttatttaacaaCTCTCAGGAAAAACGTATGCTTTTTTTTTTGGTAAGTGTTTACAATTCGTTGTAATTGACCATTTCTGTTAAACTAGAATTAGCATTAGTCAGGGATTCTAAAGGTTTTTTCCAAAACAATTGATAACATTCACTTGTAGTTTACAGTTTCTATACTACGGCCTGAGTTGTATTTGGTCCAGAAATTGACCCATATTTAACAACGGCAGCAGAAGGGCTGGACCCAGCAGTGTCTCTCAATGTCGTGTTAACATGTTTCATTGACTTTAATGGTTATGGCTGTTAAGTAATATCCCTTTAATGGTTATGGCTGTTAAGTAATATCCCTTTAATGGCTGTTAAGTAATATCCCTTTAATGGCTATGGCTGTTAAGTAATATCCCTTTAATGGCTGTTAAGTAATATCCCTTTAATGGCTGTGGCTGTTAAGTAATATCCCTTTAATGGCTGTTAAGTAATATCCCTTTAATGGCTGTTAAGTAATATCCCTTTAATGGCTGTGGCTGTTAATAAGTAATATCCCTTTAATGTCTTACTGCTATTGTCATGTGTTGTTCCCAGATTAAAAGCAATGTTATTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2387996 lncRNA upstream 76741 46942982 ~ 46943760 (+) True G2087838
TU2387865 lncRNA upstream 83317 46936813 ~ 46937184 (+) True G2087727
TU2387994 lncRNA upstream 102233 46917897 ~ 46918268 (+) True G2087836
TU2387991 lncRNA upstream 104560 46915367 ~ 46915941 (+) True G2087833
TU2387982 lncRNA upstream 117243 46900603 ~ 46903258 (+) True G2087829
TU2388044 lncRNA downstream 7439 47064360 ~ 47064591 (+) True G2087881
TU2388729 lncRNA downstream 20822 47077743 ~ 47078258 (+) False G2088382
TU2388730 lncRNA downstream 20822 47077743 ~ 47078349 (+) True G2088382
TU2388731 lncRNA downstream 22701 47079622 ~ 47080068 (+) True G2088383
TU2388735 lncRNA downstream 23489 47080410 ~ 47080683 (+) True G2088386
XM_036965304.1 mRNA upstream 17097 46978103 ~ 47003404 (+) False rab30
XM_036965305.1 mRNA upstream 17097 46978327 ~ 47003404 (+) True rab30
XM_021588558.2 mRNA upstream 48470 46971287 ~ 46972031 (+) True LOC110508116
XM_036965306.1 mRNA upstream 60722 46946870 ~ 46959779 (+) True guca1c
XM_036965302.1 mRNA upstream 90241 46906850 ~ 46930260 (+) False LOC110508118
XM_021593118.2 mRNA downstream 17609 47074530 ~ 47076721 (+) True LOC110513068
XM_036965048.1 mRNA downstream 425469 47482390 ~ 47483034 (+) True LOC118944690
XM_036964775.1 mRNA downstream 583676 47640597 ~ 48319085 (+) False tenm4
XM_036964776.1 mRNA downstream 583676 47640597 ~ 48319085 (+) True tenm4
XM_036965512.1 mRNA downstream 1344332 48401253 ~ 48458439 (+) False nars2
TU2387647 other upstream 523614 46493922 ~ 46496887 (+) False G2087592
TU2387649 other upstream 523614 46493922 ~ 46496887 (+) False G2087592
TU2387650 other upstream 523614 46493922 ~ 46496887 (+) False G2087592
TU2387651 other upstream 523614 46493922 ~ 46496887 (+) False G2087592
TU2387599 other upstream 696807 46323084 ~ 46323694 (+) True G2087569
TU2389161 other downstream 468519 47525440 ~ 47528548 (+) True G2088729
TU2389165 other downstream 475501 47532422 ~ 47537945 (+) True G2088732
TU2389353 other downstream 797185 47854106 ~ 47864829 (+) True G2088870
TU2389529 other downstream 1131288 48188209 ~ 48191362 (+) False G2089020
TU2389530 other downstream 1131288 48188209 ~ 48191362 (+) False G2089020

Expression Profile