RNA id: TU2387863


Basic Information

Item Value
RNA id TU2387863
length 1192
lncRNA type sense_over
GC content 0.41
exon number 2
gene id prcp
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 47020501 ~ 47056921 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAAACATCAACAAATGTTAACTAGGTTCCTCCTTCCTACTCACAGCTGCATCATGCGACTGCAGCCCACACAGATCACTTTATATAGACTATTCAGACAGGTTGTTCTGTAGAATCGTCCTGGCCACTGCAGATATGAGGTCTGGAGGATTCGTTTCGGTATCCAGACCGGTCATAACGTCCATCGTTCTCATCTTATCGCTCTATTGTTTTCATGTGTTTGCGCTCAAGTCGCAACTTTTGACGAGGCATGGCGGGGTTACAGACCTCAATGCTCAGGACACCGTCATCAACTATGAAACATGCTATTTTGACCAGAAGACAATCAGCGTATCCGCTCTGCTTCCTGGTAGGACGGGAAAGCCATCAATACACTGGGCTGTTTTCCTGCCAACACAACTCAATCCCTGCTGGCATCCTGCCCAGAGGAACTGCAGTGTACTGACATAAAAGTGAATTTAAAGTAGGCTACTATAGACTAAAGAACATCAAAGATCCTGGAGGTTACAGCTTTCCCCCAAAATTGCATGTGCTAAAGgtataggtagcctagtggttagagcgttggactagtgaccggaaggttgcaagatcgaatccctgtagctgacaaggtacaaatctgtcgttctgcccctgaacaaggcagttaacccactgttcctagggcatcattgtaaataataatttgttcttaactgacttgcctagttaaataaagatataaaaatgatGTGAACTCTACATATCCACGTTGTTAGGTTGTCCGTTATAGCTGTGGCTAGATAGCATTTTCAACTGTTTTGTTGATCGTTGTGATTCATGCGAGTTGAAATGCTTTCTTGTAACTCGCGATCTCAGAATTGCAACAAACATGTCATGATgcattacaaatcaaatcaagctttatttatacagtacatttcagacatggaatgaaACGGAATGTGCTTCACACGAAAACATGAATAAAAAACAATGAAAAATAAAAActaaatatttactacacaacaaacataagataaacaacaataacaataaaatCTGAAAAACTAAAAAGATCCCCAAGGAAAAGCAAAGTTAAAAAggtgtgttttaagatctcttttaaatatgtccacagttccTGCCCACCCcaccctcaggttctctggcaggctgttCCAGagactgggggcatagtaactaaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2387996 lncRNA upstream 76808 46942982 ~ 46943760 (+) True G2087838
TU2387865 lncRNA upstream 83384 46936813 ~ 46937184 (+) True G2087727
TU2387994 lncRNA upstream 102300 46917897 ~ 46918268 (+) True G2087836
TU2387991 lncRNA upstream 104627 46915367 ~ 46915941 (+) True G2087833
TU2387982 lncRNA upstream 117310 46900603 ~ 46903258 (+) True G2087829
TU2387871 lncRNA downstream 9918 47032267 ~ 47035518 (+) False prcp
TU2387869 lncRNA downstream 13241 47035590 ~ 47035929 (+) True G2087731
TU2388028 lncRNA downstream 17763 47040112 ~ 47040808 (+) False G2087869
TU2388029 lncRNA downstream 17763 47040112 ~ 47040808 (+) False G2087869
TU2388031 lncRNA downstream 17763 47040112 ~ 47040808 (+) True G2087869
XM_036965304.1 mRNA upstream 17164 46978103 ~ 47003404 (+) False rab30
XM_036965305.1 mRNA upstream 17164 46978327 ~ 47003404 (+) True rab30
XM_021588558.2 mRNA upstream 48537 46971287 ~ 46972031 (+) True LOC110508116
XM_036965306.1 mRNA upstream 60789 46946870 ~ 46959779 (+) True guca1c
XM_036965302.1 mRNA upstream 90308 46906850 ~ 46930260 (+) False LOC110508118
XM_021593118.2 mRNA downstream 52181 47074530 ~ 47076721 (+) True LOC110513068
XM_036965048.1 mRNA downstream 460041 47482390 ~ 47483034 (+) True LOC118944690
XM_036964775.1 mRNA downstream 618248 47640597 ~ 48319085 (+) False tenm4
XM_036964776.1 mRNA downstream 618248 47640597 ~ 48319085 (+) True tenm4
XM_036965512.1 mRNA downstream 1378904 48401253 ~ 48458439 (+) False nars2
TU2387647 other upstream 523681 46493922 ~ 46496887 (+) False G2087592
TU2387649 other upstream 523681 46493922 ~ 46496887 (+) False G2087592
TU2387650 other upstream 523681 46493922 ~ 46496887 (+) False G2087592
TU2387651 other upstream 523681 46493922 ~ 46496887 (+) False G2087592
TU2387599 other upstream 696874 46323084 ~ 46323694 (+) True G2087569
TU2388024 other downstream 4770 47027119 ~ 47028563 (+) True G2087865
TU2387877 other downstream 14693 47037042 ~ 47038403 (+) True prcp
TU2389161 other downstream 503091 47525440 ~ 47528548 (+) True G2088729
TU2389165 other downstream 510073 47532422 ~ 47537945 (+) True G2088732
TU2389353 other downstream 831757 47854106 ~ 47864829 (+) True G2088870

Expression Profile