RNA id: TU2387871


Basic Information

Item Value
RNA id TU2387871
length 1384
lncRNA type sense_over
GC content 0.37
exon number 4
gene id prcp
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 47020501 ~ 47056921 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCGAATAAGCACAAGCACACAATGagtaacacacgggacgagacccgtaatcatctgcgcaataggtgccaggtgtgcgtgatgaacgttcccggagggatccgtgacactaGGTTGGGTTTAAAGTAGCAGCGTGTCATATTTTAGCCATCCTCTTGATTTCTTCATGTTTTTCTGATGTACGTCTCTGTCCTTACAGATCGATCACTTTGGTTTCCTGGAGGATGGCACCTTTAAGCAGAGATACCTGGTTAATAATGAACACTGGGATCAGAAGGGAGGGCCTATCTTGTTCTACACCGGCAATGAAGGAGACATTACCTGGTTCTGCAATAACACTGTAATAATTACCCttctgtattcatcttctctgttctgtattcatcttctctgttctgtattcatcttctctgttctgtaatgtgttcatcttctctgttctgtattcatcttctctgttctgtattcatcttctctgttctgttctgtattcatcttctctgttctgtattcatcttctctgttttgtattcatcttctctgttctgtattcatcttctctgttctgtaatgtattcatcttctctgttctgtattcatcttctctgttctgtattcatcttctctgttctgtattaatcttctctgttctgtgttcatcttctctcttctgttctgtattcatcttctctgttctgtattcatcttctctgtaatgtattcatcttctctgttctgtattcatcttctctgttctgtattcatcttctctgttctgttctgtattcatcttctctgttctgttctgtattcatcttctctgttctgtattcatcttctctgttctgtaatgtattcatcttctctgttctgttctgtattcatcttctctgttctgtgttcatcttctctgttctgttctgtattcatcttctctgttctgttctgtattcatcttctctgttctgttctgtattcatcttctctgttctgttttgtattcatcttctctgttctgtattcatcttctctgttctgttctgtattcatcttctctgttctgtaatatattcatcttctctgttctgtattcaccttctctgttctgttctgtattcatcttctctgttctgtaatgtattcatcttctctgttctctgttctgtaatgtattcatcttctctgttctgttctgtattcatcttctctgttctgtattcatcttctctgttctgtaatGTATTCATATTTTCTGTTCTGTAatgtattcatcttctctgttctgtattcatcttctctgttctgttctgtattcatcttctctgttctgtattcatcttctctgttctgtattcatcttctctgttctgtaatgtattcatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2387863 lncRNA upstream 9918 47020568 ~ 47022349 (+) False prcp
TU2387996 lncRNA upstream 88507 46942982 ~ 46943760 (+) True G2087838
TU2387865 lncRNA upstream 95083 46936813 ~ 46937184 (+) True G2087727
TU2387994 lncRNA upstream 113999 46917897 ~ 46918268 (+) True G2087836
TU2387991 lncRNA upstream 116326 46915367 ~ 46915941 (+) True G2087833
TU2387869 lncRNA downstream 72 47035590 ~ 47035929 (+) True G2087731
TU2388028 lncRNA downstream 4594 47040112 ~ 47040808 (+) False G2087869
TU2388029 lncRNA downstream 4594 47040112 ~ 47040808 (+) False G2087869
TU2388031 lncRNA downstream 4594 47040112 ~ 47040808 (+) True G2087869
TU2388044 lncRNA downstream 28842 47064360 ~ 47064591 (+) True G2087881
XM_036965304.1 mRNA upstream 28863 46978103 ~ 47003404 (+) False rab30
XM_036965305.1 mRNA upstream 28863 46978327 ~ 47003404 (+) True rab30
XM_021588558.2 mRNA upstream 60236 46971287 ~ 46972031 (+) True LOC110508116
XM_036965306.1 mRNA upstream 72488 46946870 ~ 46959779 (+) True guca1c
XM_036965303.1 mRNA upstream 102007 46914788 ~ 46930260 (+) True LOC110508118
XM_021593118.2 mRNA downstream 39012 47074530 ~ 47076721 (+) True LOC110513068
XM_036965048.1 mRNA downstream 446872 47482390 ~ 47483034 (+) True LOC118944690
XM_036964775.1 mRNA downstream 605079 47640597 ~ 48319085 (+) False tenm4
XM_036964776.1 mRNA downstream 605079 47640597 ~ 48319085 (+) True tenm4
XM_036965512.1 mRNA downstream 1365735 48401253 ~ 48458439 (+) False nars2
TU2388024 other upstream 3704 47027119 ~ 47028563 (+) True G2087865
TU2387647 other upstream 535380 46493922 ~ 46496887 (+) False G2087592
TU2387649 other upstream 535380 46493922 ~ 46496887 (+) False G2087592
TU2387650 other upstream 535380 46493922 ~ 46496887 (+) False G2087592
TU2387651 other upstream 535380 46493922 ~ 46496887 (+) False G2087592
TU2387877 other downstream 1524 47037042 ~ 47038403 (+) True prcp
TU2389161 other downstream 489922 47525440 ~ 47528548 (+) True G2088729
TU2389165 other downstream 496904 47532422 ~ 47537945 (+) True G2088732
TU2389353 other downstream 818588 47854106 ~ 47864829 (+) True G2088870
TU2389529 other downstream 1152691 48188209 ~ 48191362 (+) False G2089020

Expression Profile