RNA id: XM_036965523.1


Basic Information

Item Value
RNA id XM_036965523.1
length 2686
RNA type mRNA
GC content 0.50
exon number 4
gene id LOC110508133
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 50465883 ~ 50476608 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACCTGGAGGTCTGTCCCGCTAGCACTGTTATCTGCTCCCAGCAATGGATCCGCTTCCCAGTGGCAGACACAGACTCTTCCATCTACAGGACCAACCTGGCTGACCCTGAGAAGCAGCTGAACGTGTCCATGGTCCTCTTAATAATGGAGTTTACTGCTATTTCTACAGGACCACCCTGGCTGACCCTGAGAAGCAGCTGAACGTGTCCATGGTCCTCTTAATAATGGAGTTTACTGCTATTTCTACAGGACCAACCTGGCTGACCCTGAGAAGCAGCTGAACGTGTCCATGGTCCTCTTAATAATGGAGTTTACTGCTATTTCTACAGGACCACCCTGGCTGACCCTGAGAAGCAGCTGAACGTGTCCATGGTCCTCTTAATAATGGAGTTTACTGCTATTTCTACAGGACCAACCTGGCTGACCCTGAGAAGCAGCTGAACGTGTCCATGGTCCTCTTAATAATGGAGTTTACTACTATTTCTACAGGACCACCCTGGCTGACCCTGAGAAGCAGCTGAACGTGTCCATGGCCCTGAGAGACCAGGAGCTCCTCTTCAGATGCCTCAAGATGAAGACCGTCTTCCCTGAGCTGATGGAGAAGGTGAAAGCAGAACCTGCTCAGAAAGAGATAGATGTAGGGGTCACCAGCTCTGCAGGTGAAGGTTGTAGTTCGTTAGACCCCAGTGAAGCAATGGAGGATGGATATAACGGTTATGGAGATGGGATGGGGCAGGAGAAGGAACTGagtcaggaagagagggaggcctTGGCCAAGAACATGGACGTGGCAACTCTCCAGAACTACAGCTCCTATGAGGCCAAGTACAGGAAGGAGATGAAGGGATGCCAACAAACCGTCAAAAACATGGAAAAGAAGTTGAATCCCGGTGATGGTGAAGAAGAGAAAGCATTTAGCTTGTCAAATGGTCATAGAGAGCTGGATGGGGATGAATCATCCAAGGAGTGCCAGGAGAATGGAGCCACTGCACGTGCTGTAGACGTCACCAGGTCTGGCCTTGCACCGTGGCAGGACGGGGTCATGGAGAGACTGCGTAGAGAGGTCACCACTGCAGACTACAACATGTATTTGGTCCACCATGGAGCTATGCTGATCAACTTCGGTCAGCTTGCCGCCTGCACCCCAAGGGACAAGGACTTTGTTTATGGAAAGCTGGAGCCCATAGAGGTTCAAACTGTCAGAACGTTCAACGTTCCGACGAGCTACCGGCCAAAACGGATTCACATGCACGACCCTTGGTCACCGATGGTCAACAAAAGTGTTGACACGTCAGATCTAGGCGTGTCCGTAGAAGATCTACCGAAGTGTGATGAAGTCAATGCAACTTTGTTGTGCTTCTTGGAGAAAGAACTGAAGGGTCACAACATCTCAGAAAGTGGAGGAGCAGACGGCTTCTATGTACACATTGGAACACAGACTTACAACATCCCATCTGCTCCGTTCAAACCTGAAGCCTCTCTGGCAGAcatcatcacagacacacacaaaggccTCTATGTCCAGATCCAAGCTGAGGACATAACCAGAAGACACAACTTTACCAATTCTGCTTTTAGTTACCTCTGTGGCCACGTCTTCCGCCGCGATGAATACCACACTCACTTCAAGAATGTGCACTTGGACATCCAGTCCTGCCTGAACGACTGGTTCGAGCAGCGCTGCCCTCTAGCGTACCTAGGCTGCAACTACAGCCAGAGGAGGTTCCATCCCGCAGGTCAGAGAGCCACCGTCACCTACCACCAGGATCTCAGCACCTTCAGCCTCAAACCAGAGGGCCCCTCAATGCTGTCCAACTCTGAGAAGACCATCAGCATCACCTCTGACAGGAAGCATCCCCGTAAGCTGGACCCGTTGAGCAGACTTCCCTTTGAGATCCTCCATCACCTGGCAGGGTTCCTGGACAGCTTTAGCCTGTCTCAGCTGTCCCAGGTGTCCCAGTTGATGAGGGAGGTGTGTGTCACACtgctagaggagagggggatggtctATCTGAAATGGGAGAAGAAGACCTACTCCCATGGAGGGTCTTCATGGAAATGTAGAAAAAATGTATGGGAGTTTAGCAGTCTGTTTTCCAAGGTGGACAGGTGGTGCTTTGATGATGTCCCCTCCATGTCTGAGCACCTGAAGGTCTGCCCTttctaccagagagaggagctcAGTCAGCCTGTAAAGCTAGCCAGCATggagggggctagagagagaccCCAGGGCCTACTGGACCTGTCCCAGGAGTATGACCTGCCTCTAGCAGACCAATGACATTATAAGGAGTGGGCGGTAGGTAACCCAGCAGCTAAGGATTTGGACCTGTAGCCCAAAAGTCAGCAATTTGAATCCTGGGCTGGCACTCGATTGATCTGAGCACTGGCTTTAAATCATAACAACAATTCTCTACTGTTGGGCCTTGGAGCAAGGCACTGCACTGCAGCTTGACCCTGTGCTCCTCTCAACTGTGTGCGTGTGATGTATGCTGGGAAAATGAGCAGAAGACTAAGGTCCCTTAATAAACCTCGTAGAAATACGCTGTAAGAGCTTACAATTAATCATTGTTACTAAATTTATAAATGTCAATAAGCAATTTCTACAAAGTAATTAATGCATTTATAAACACTATTTTACATGATTTATAAATGATTCATAAACACAATTTTACATTATTTA

Function

GO: NA

KEGG:

id description
K10315 FBXO40; F-box protein 40

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2392100 lncRNA upstream 38026 50426774 ~ 50429069 (+) True G2091153
TU2392099 lncRNA upstream 39383 50425243 ~ 50427712 (+) False G2091153
TU2392074 lncRNA upstream 69982 50393672 ~ 50397113 (+) True G2091135
TU2392069 lncRNA upstream 75353 50391464 ~ 50391742 (+) True G2091131
TU2392029 lncRNA upstream 107558 50359327 ~ 50359537 (+) True G2091098
TU2392133 lncRNA downstream 5973 50482581 ~ 50486984 (+) True G2091182
TU2392134 lncRNA downstream 11355 50487963 ~ 50490523 (+) True G2091183
TU2392223 lncRNA downstream 41736 50518344 ~ 50518653 (+) True G2091255
TU2392249 lncRNA downstream 62433 50539041 ~ 50539315 (+) True G2091276
TU2392283 lncRNA downstream 104151 50580759 ~ 50581478 (+) False G2091308
XR_005040013.1 mRNA upstream 1143229 49323013 ~ 49323866 (+) False LOC118944717
XM_036965366.1 mRNA upstream 1200460 49201448 ~ 49266635 (+) True pgr
XM_036965696.1 mRNA upstream 1280982 49089883 ~ 49186113 (+) False trpc6b
XM_036964717.1 mRNA upstream 1692414 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036964625.1 mRNA downstream 189111 50665719 ~ 50850459 (+) True LOC110507254
XM_036965435.1 mRNA downstream 996912 51473520 ~ 51509546 (+) False LOC110508131
XM_036965436.1 mRNA downstream 996912 51473520 ~ 51509546 (+) False LOC110508131
XM_036965437.1 mRNA downstream 996912 51473520 ~ 51509546 (+) False LOC110508131
XM_036965439.1 mRNA downstream 996912 51473520 ~ 51509546 (+) False LOC110508131
TU2392024 other upstream 113928 50352368 ~ 50353167 (+) True G2091093
TU2391495 other upstream 379404 50082063 ~ 50087691 (+) True G2090638
TU2391337 other upstream 678290 49785127 ~ 49788805 (+) True G2090508
TU2390858 other upstream 1132912 49333447 ~ 49334183 (+) True G2090103
TU2390856 other upstream 1143492 49323169 ~ 49323603 (+) True LOC118944717
TU2392994 other downstream 893156 51369764 ~ 51370763 (+) False G2091895
TU2392995 other downstream 893326 51369934 ~ 51370763 (+) True G2091895
TU2393075 other downstream 993280 51469888 ~ 51470391 (+) True G2091960

Expression Profile