RNA id: TCONS_00055126


Basic Information

Item Value
RNA id TCONS_00055126
length 2007
RNA type mRNA
GC content 0.55
exon number 6
gene id XLOC_028381
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 818928 ~ 858434 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGACGCGTGCCGCCCGGCGGAGAAGCGCAGCCGCAAACCCGCTCACCCGCTGCGGAGAAACATCAGCGAGGACATGAAGAACTTTGCTGAAAACACCATGAATGAGCTGTTGGGTTGGTACGGCTATGATAAAGTGGACCTGCAGGACTCAGAGGCTGCAGACGCACGAAACCGAGTCAAACGCAACCATATATCGGTTCTTAAAgAGAACGCTGTGCCAAAGCCACTCAATGTGGAGAAGAAGATCCCTCCATCATCATCCtcgtcttcatcatcatcatcctcctgtTCATCAGAGCCGGTCAGGAATGGAGATCAGGATCCTCCAACTGTTCCTGTGTCTCCCTCTGCATCTTCAGCCTCGCCACGACACAACATGAACGTCATCGTGCCGCTCATCAAACCCtccgcagtgGAGGACGTCCAGAACGTGCAGATCGTGTGTGTGTGGTGTCAGAAGGAGGGAATGAAGCGTTACTCTCTGCTCATGGGCTCTGAACTCAAGAGTTTTTGCAGCGAGAAGTGTTTCGCAGCCTGTCGACGCGCATACTTCAAACGCAACAAGGCTCGAGATGAAGATCGCCATGGTGACAAGTCTCCGTCTCCTGGCCAAACTCTGGACACGCCCACAAGACTGATGCTGAAgatgaacaacaacaacagcagcacacGTGTGTGTGACTGGTGTAAACACATACGCCACACTAAAGAATACCTGGACTTCGGTTCGGGTGAGGAGCGACTGCAGTTCTGCAGCACCAAATGCCTGAACCAGTACAAGATGGACGTGTTTTACCGGGAGGCTCGGGCTGCGCTCACCAGCTCCAAAGAGGAAGAGAACCACCCGAAACCCGCAGCCACCAGCGAAAACCAGACACTGCTCACTCCGGACGCCTGGGAGTCTCCAGCGAAAAGCCTCTCGCCCCAAACCCCAACAGCATCTGCATTGCAGAGAACGCCTGTTTGCATGCGGGTTCAGATGGCCACTTCGCCCAAATCACCCACTGGTCCGTCTCAGGGTACACCAGAGCAGCCACGCCCACCTCACATGCCCCTCCCCTTTATACGTCCACCCCTGCACGCCCAGAGCCTGCGAAGCCCCACCCCTAATCTCCCTCATAACCCGCCTCACCCTCTTAGCCCCACCCAAAGGGTGCCATTTGCCCCGCCCCCTCACTACCCCCTCCCATACCTGCCCCTCCACCCAACATTTCCACCACAAATGCCTCCGCCGTGGCCCCAGCCCATGATGATGATGCCTTACCCTGTGTTTGTACCCATTCCTATCCCAATCCCTATCCCCATCCCGATTTCCCCTCAGAACAGCCACCGAGGGGTCATCCGAAGCCTTCAGGAGCCGGAAAAAGAGCCCGCTGGGAGTCAGAGGGTAAAGACGGAGCGGTGTGTTTCTCCAGTGTCTGCATCCGAGCGGCAGGTCATTCAATGTCTGCGCAGAGACTCTGTGAAAGAGGAGAGAAATGACACACACATTCAGACTCTACGCAAAGCACTTTACACCTCTGTCCTCACATCCACAGCCTCAGCCTCATTGGACGGCAGAATCGTTAGTCCCGCCTCTTTGTACTCATTGGCTCGCTCCACTGCCATTCAGGCTGCCTCGTTTTCATTGGACAGCAGCTCCGGCCAGATCCCGTCGCCTCTGTCTGACTGTGAGGATGTGAAGGAGAATAGCTATTTATGTGGGCGGGGCAATGACTCAGCCAATCAGTGGACGGCAGAGCAAATGGACTGTCAGAGTGACCAATCAAAAGAGGGCAAAGGGGAGGAGGAAACGCCTCAGGATGTGGAGCACACCTACGCACGGTCGGTGCCGCCAAAACTACGGGAGAAAAACACACACGTGAACACTCAAACACATTTACACACGCAAATCTGGGAGAAAAACACACAGGTGGATGAGCTGGGACCCGAGCAGAGCGTGCGGGACGATGCAGAGCCGGCTGTGAAGAGGCGATGCTTAAGGATCAGAGACCAGAACAAATGA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-8 Predicted to enable metal ion binding activity. Orthologous to human SOBP (sine oculis binding protein homolog).

Ensembl:

ensembl_id ENSDART00000185280

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055118 lncRNA downstream 51012 771352 ~ 772392 (-) True XLOC_028378
TCONS_00055116 lncRNA downstream 53584 764396 ~ 769820 (-) False XLOC_028378
TCONS_00055117 lncRNA downstream 53773 769043 ~ 769631 (-) False XLOC_028378
TCONS_00055114 lncRNA downstream 70331 751290 ~ 753073 (-) True XLOC_028377
TCONS_00057306 lncRNA downstream 90920 723830 ~ 732484 (-) True XLOC_028376
TCONS_00057976 lncRNA upstream 62194 899962 ~ 903988 (-) False XLOC_028383
TCONS_00057977 lncRNA upstream 62194 899962 ~ 904022 (-) True XLOC_028383
TCONS_00057978 lncRNA upstream 81984 919752 ~ 921761 (-) True XLOC_028385
TCONS_00057979 lncRNA upstream 173192 1010960 ~ 1013095 (-) True XLOC_028389
TCONS_00057307 lncRNA upstream 184548 1022316 ~ 1023700 (-) True XLOC_028391
TCONS_00055122 mRNA downstream 7533 798696 ~ 815871 (-) False XLOC_028380
TCONS_00055119 mRNA downstream 25546 783644 ~ 797858 (-) False XLOC_028379
TCONS_00055121 mRNA downstream 25573 787066 ~ 797831 (-) True XLOC_028379
TCONS_00055120 mRNA downstream 33759 785302 ~ 789645 (-) False XLOC_028379
TCONS_00055115 mRNA downstream 43608 764100 ~ 779796 (-) False XLOC_028378
TCONS_00055127 mRNA upstream 23676 861444 ~ 880415 (-) False XLOC_028382
TCONS_00055128 mRNA upstream 24280 862048 ~ 890220 (-) True XLOC_028382
TCONS_00055129 mRNA upstream 67715 905483 ~ 908821 (-) True XLOC_028384
TCONS_00055130 mRNA upstream 91789 929557 ~ 948776 (-) False XLOC_028386
TCONS_00055132 mRNA upstream 120283 958051 ~ 965267 (-) True XLOC_028387
TCONS_00055123 other downstream 14951 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055111 other downstream 137985 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055131 other upstream 99461 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055166 other upstream 1222756 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 1837338 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055220 other upstream 3654798 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055225 other upstream 3708441 4546209 ~ 4570805 (-) True XLOC_028452

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000068_00679462_00683567.mRNA False 2382 mRNA 0.51 5 CI01000068 679021 ~ 683567 (-)
tiger barb (Puntius tetrazona) TU265160 False 848 TUCP 0.59 4 NW_025047891.1 251477 ~ 254842 (-)