RNA id: TCONS_00055133


Basic Information

Item Value
RNA id TCONS_00055133
length 5564
RNA type mRNA
GC content 0.40
exon number 8
gene id XLOC_028388
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 982028 ~ 992148 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTGTTTCAGGCATGTGGTCAGCCTGTGTTTTATTTCTGGCCTTCTCCTCGGCCGCCTTAGCACTGGACAATGGGCTGATGAGGACCCCGCCGATGGGCTGGTTGGCTTGGGAGCGATTCCGCTGCGACATCGACTGTCAGAATGATCCCTACAACTGCATCAGTGAGCAGCTGTTCATGGATATGGCGGACCGGCTGTCAGAGGATGGATGGAAAGAGCTGGGCTACGTCTACGTCAACATCGACGACTGCTGGTCCTCCAAAGACAGAGATGCTCAGGGCCGACTGCAGCCCGACCCTAAGAGGTTTCCTCGAGGCATTCCTCATCTGGCGCAGTACGTCCATGACCGTGGGCTGAAGCTGGGCATCTATGGGGACATGGGCACGCTGACCTGCGGAGGGTATCCGGGAACCACACTGGACAAGATTGAGACAGACGCACAGACGTTTGCGGACTGGGGGATCGACATGCTCAAGTTGGACGGATGTTACTCCAACTCGTCCTATCAGGAACAAGGATACCCAATGATGTCGAAGGCCCTCAATGCTACCGGTCGTCCTATTGGCTACTCCTGCAGTTGGCCTGCCTACCAGGGAGGCCTCCCACCTAAAgtgaactacacTCTGCTGGGTCAGATCTGTAACCTGTGGAGGAACTATGATGATATCCAGGACTCGTGGGACAGTGTGATGGGCATCGTGGACTGGTTCTTCGACAATCAGGACGCCCTTCAGCCTGCAGCCGCACCAGGACAGTGGAACGACCCAGACATGCTGATCATTGGAGACTTCAGCCTCAGTCTGGATCAATCTCGGGCTCAGATGGCTCTATGGTCCATCATGGCGGCTCCGCTCTTCATGTCCAACGACCTGCGCACCATCAGCAGCGCCGCTCGCTCCGTCCTCCAGAATAAAGCGGTCATCTCCATCAACCAGGACCCGCTGGGCATCCAGGGCAGACGCCTGCTCAAGGAGAAGAGCGGGATCCAGGTGTTCCAGCGGCCGCTCTCTAAAGGAGCCAGCGCTCTGGTGTTTTTCAGCCGCAGGTCTGATATGCCATACCGCTATACCACATCTCTGAAGACTCTGGGATACCAGCCTGGAGTATTTGAGGTGTTTGACGTATTCTCAGAGCAGCGTTTGCCTGAACTGAAGGATAGCACTCAGTTCACCGTGTCCATTAACCCATCTGGCGTGGTCATGTGGTACATCTATCCGGCTGCTGATCGGTGGAAAGAGGCGGAGTTTGAGGGGTTCAGCAAGAAGCTCATAGGCCCGAAGTTTCATCGACATGCTAATGAGGTTGACGCCCCCCTGGTGCTTTGATTGGCATTGCGAGGCTCCGCCTATCTGGAATATATAACACACTCAGGGACTTTTAAACAGTGAATCGTGCCTACAATGTTGATCTGAGATTTccctttttattgattttctctTTGATAAAGCTGTTCATATTAATCAGATGTTTCTAAAAGCTTTTGCACTGACCTTCAGAAGAAGCCTGTTTACAAACCCATAGCATAAGTCAATTATGTAAAGTTAATTTAGCACTAATAATGTTCATGATCAAatgtactgctgtttttaaacCCAAATAAACACACTTGATTGTCAGACTCAGTCACTGTATATATTGGCTCATGTGTAATGCTGATTGCTTGGAGCTTTCagtagattattcattcattatattatttcataatataCATTGGgagatactagtgttcagcttaaagtgtgatTCAGAGGCATGactaaggtaattaggcaagtcattggacaacaatcCAGCAAAAACGTTGATAACGTGATAACATTTTTTCCACGACATATTTAATTTgacatctgttttttttaaaacgtCATAAATTCGTACTTTTACAACTTTGGTTACACTATAAACAGCCACAGCCatttcaccctgcagcccaagactcactgaagctaagcagggctgaggctgctcagtacctggatgggtgaccacatgggaaaactaggttgctgttggaagtggtgtcagtgaggccaacagggggcgctcaacctgcagtctgagTGAGTATTGATGCCCCAGAATAGTGAAGGGTAgtgtcgtctttcggatgagacgttaaaccgaggtcctgactctctgtggtcattaaaaatcccatggcacttctcgtaaagagtaggggtgtgaccccggtgtcctggccaaattccttcCATCAGGCCTTACTGATCATGGACTCTATAACATCGCCATCCACTGAgtctgtctctccactccaccaacagCTAATGAGTGGTTATCAAATGTTTTTCCTTTGTGTCGACTGCCATTAGAATTGTGAATACTGGGTTGTAAGTATGTGCAGGGTTTTATATTGAGTTTTTAATGTGATATATGTGATGACATtgtatttgtgttgcctgtttttttctgtgatgtgtgtaatgtgaaCGCTGATGTGGTTGTGTGTGGTGAAGCCAACGATAAGTTTACACTTTGGGAcagtaaagtaagtaaagtaaagtaagcGCACTGGCACCGTGGTCCTGTGGCTGCCTTCAGTATGGAGAGACTCCAATCCACCCGCCCCTCTTATTGTGAAGCACCGAATGTAATGACTTtaaattctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctttctgtctgtccatctatccatctgtctatctatccgtctgtccgtctgtctatctatctgtctatctatctatctgtctgtctgtctgtctgtctgtccatctgtctgtctgtctgtctgtctatctatccgtctgtctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctacttgttcgtctgtctgtccgtccgtctgtttctctctctctctctctctatctctctatatatatattaaaggtcaaaagtttggggtcagtttttttcatgttaaataactgttttcttattgtatgtagtttgaaatgatattattactccagtcattactgcttttattactattaataataataataataataattaatatcagAGTGATTTCTGAATGGAATGATGAAGCTAAAACTTCATCTTAAAAATCGctggaataaattaataaattatgagctacttttgaacagttactATATAGTGCAAAGACATTTCACAGTTTtaatgtgtactgtatttttgattaaataaatgcagcttcgGGGagcagaagcttattttaaaacatttaaaaatcacactgaccccaaacgcTTTTGACGGTAGTGTttatgaaaaatgtataaaaataaatcaatattacttgtatatgaaatatttaaaataaaatcaagtcATTTTCTCCTCTGTAAacactaatatgtttagaaaaaatgtatatgcagaaatgtaaatataataatttaatagattGATATGACAATAttcatgaatattattaattttaaatgcgTGTCCATATTGAACGTATTGACGTAATGTACACAGACAAGATTACGTAACGTGTGAAGTGGACGCGCAGATCACAGAGCTTGTCCGAGACGACCGCGTTAAATTCAAAAGTAAGTTGATAAGCATTTCTGAATTTTAAGAGTGTTTAAAGACTTGACAAGACCATGTTTTCCAGGTTTGGGTCGTGTCAAGTCCTTTAAAGCTGCAACTGTACCGGAATTACCGCTGGACTAGATAGAAATGGACATCTTAGACGACATGGGGTGAGTGAATTGTTTTGGTAAACTACTGATGTGATTTATCGATTATTAAGATTCTCGACAATTAATTAGCCGTAAAATAATCTTTGGTAACCGTATCCCTAATTCAAACAAATTACTTAAAAGTCAAATTTCTGAACCAAACTCTCCACATGAGGGCGACAATCACACATCAGACGCCAATAATCTTCACCTGCTTGACTctaattaacaattaaaaactaAGTCAGGTCATCTTTCATCAAATATGAGCTGATTTATGATCAATTCCAAGTCATTTCATGATCTCAGACTTTAACACCATTAAATCTGATTTATATACACAATGCAATAcatctatttttgtttatttctattttatttgcaTCTGTTTCTATACTTTATTGATGTGTCAAACCTTCTAAGCTCCAAAACATTTTTTCccttaaccattgactttaaaaaTCCAAAAATGTCTATTATACTCAGTTTAATTTATTCGGTGTACAAGTGAAGAGAGTGCGtttggatgtttttttaatgttgaatTTAATGTAAGCAGATTCAGATGAGGAACGTGCAACTAGACAAGCGATAAACAGTCACATGACCAACGGTGAACTGAAGCAACACACATTTGAGATGGACTCACAATAACATCactaagcaaacacacacaggagTCAAACAGACGTGTCAGAAGGCACAGCGCATCCACTGGTGTTTTTGTTCATTCACAGTTTGAGATGAAGCTtttagtcttgttatactgtgcAGGTCAGAGGCCGTATTTCTTCTGTAAGTCTTGAACTGTGGAGTCTGTCAGACCGGCATTGTGAATCCGTTCAAACAGCTCCTGCACCACTACAAGATCAACAACAGAAAGAGAGAGCGTGTTTATCCACTATTGCAGAAATCTATATATCACTCAATTTATACTAGGGATATTGGGAAAATCGACCATTGCAATATTTTCCTCTGCGATTATGAATATAATATCACCTGATGGCTTAAATGGCATTTGCAAagtcattcatttagattgattgggatagtTTTGTAGGGAGTTAGTCGTGTATAGGcctgtatattattttatatacatataatttattatatagatTTAATTACCAAACTACACACATAAAAAAGAAAGactaaagtgaaataaacagtgctttatggattTTCTGGGGAGTCCAACAGTATTCAGGTCGAtgtattgaataattaaatgtaaaataacactgcattatTGTTTATTGAAATTACAAATGTTACAGTTTCTTGCGCTTGAATGCTTTACACTATAAAATTAATCACAAAGGCCttaaaacacatacaaatgaCAAACTTTCACCCTATTGTACTGTAGTTCGATTCTGCAGTGACTTCACAAATCGCATGTGTTTTGAACTGTGGTTAATAAACtggtttaaaaaactaaataaactgtaATGCTCaccatgtgactattgcaaatagaCATATATtacgatattgatgctgaaaccatatgttgtgcagccctaatacatgCATATgagattattaataatattattcaataatacatGCATATGAgatcatatataataataatatttaataatacatgcATATGAgatcattataaatatttaataatacataaaagataatatttaataataaaaatatgtaataatttat

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0009311 oligosaccharide metabolic process biological_process
GO:0016139 glycoside catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0046477 glycosylceramide catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0004557 alpha-galactosidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016798 hydrolase activity, acting on glycosyl bonds molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko00520 Amino sugar and nucleotide sugar metabolism
ko00603 Glycosphingolipid biosynthesis - globo and isoglobo series
ko04142 Lysosome

ZFIN:

id description
ZDB-GENE-051113-256 Predicted to enable alpha-galactosidase activity. Predicted to be involved in glycoside catabolic process; glycosylceramide catabolic process; and oligosaccharide metabolic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in lysosome. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in angiokeratoma and neuroaxonal dystrophy. Orthologous to human NAGA (alpha-N-acetylgalactosaminidase).

Ensembl:

ensembl_id ENSDART00000184706

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057978 lncRNA downstream 60267 919752 ~ 921761 (-) True XLOC_028385
TCONS_00057977 lncRNA downstream 78006 899962 ~ 904022 (-) True XLOC_028383
TCONS_00057976 lncRNA downstream 78040 899962 ~ 903988 (-) False XLOC_028383
TCONS_00055118 lncRNA downstream 209636 771352 ~ 772392 (-) True XLOC_028378
TCONS_00055117 lncRNA downstream 212397 769043 ~ 769631 (-) False XLOC_028378
TCONS_00057979 lncRNA upstream 19917 1010960 ~ 1013095 (-) True XLOC_028389
TCONS_00057307 lncRNA upstream 31273 1022316 ~ 1023700 (-) True XLOC_028391
TCONS_00057980 lncRNA upstream 37793 1028836 ~ 1036046 (-) True XLOC_028392
TCONS_00057981 lncRNA upstream 63618 1054661 ~ 1104776 (-) False XLOC_028393
TCONS_00057982 lncRNA upstream 81224 1072267 ~ 1259741 (-) False XLOC_028393
TCONS_00055132 mRNA downstream 16761 958051 ~ 965267 (-) True XLOC_028387
TCONS_00055130 mRNA downstream 33252 929557 ~ 948776 (-) False XLOC_028386
TCONS_00055129 mRNA downstream 73207 905483 ~ 908821 (-) True XLOC_028384
TCONS_00055128 mRNA downstream 91808 862048 ~ 890220 (-) True XLOC_028382
TCONS_00055127 mRNA downstream 101613 861444 ~ 880415 (-) False XLOC_028382
TCONS_00055135 mRNA upstream 23505 1014548 ~ 1015896 (-) True XLOC_028390
TCONS_00055136 mRNA upstream 63665 1054708 ~ 1068155 (-) False XLOC_028393
TCONS_00055137 mRNA upstream 112115 1103158 ~ 1147655 (-) True XLOC_028393
TCONS_00055138 mRNA upstream 310393 1301436 ~ 1360495 (-) False XLOC_028395
TCONS_00055139 mRNA upstream 312294 1303337 ~ 1324141 (-) True XLOC_028395
TCONS_00055131 other downstream 33186 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055123 other downstream 173575 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055111 other downstream 296609 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055166 other upstream 1069481 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 1684063 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055220 other upstream 3501523 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055225 other upstream 3555166 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055239 other upstream 3939368 4930411 ~ 4932524 (-) True XLOC_028460

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU124444 True 2209 TUCP 0.43 2 NC_048566.1 5837677 ~ 5840273 (-)